Project measure / variable:   Crusio1   iipmf_pct_R

ID, description, units MPD:62053   iipmf_pct_R   percentage of hippocampus that is Intra- and infrapyramidal mossy fibers   [%]  right  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is Intra- and infrapyramidal mossy fibers right



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means2.3613   % 2.408   %
Median of the strain means2.3542   % 2.3431   %
SD of the strain means± 0.62783 ± 0.64003
Coefficient of variation (CV)0.2659 0.2658
Min–max range of strain means1.2049   –   3.8356   % 1.309   –   4.1747   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.2899 0.2899 0.6741 0.4122
strain 47 166.42 3.5409 8.2339 < 0.0001
sex:strain 47 14.5713 0.31 0.7209 0.9144
Residuals 343 147.501 0.43


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 2.0265 0.0   1   0.0 0.0 2.026517596, 2.026517596 -0.53
BXD1 m 2.0219 0.0   1   0.0 0.0 2.021931628, 2.021931628 -0.6
BXD100 f 2.3662 0.30902   5 0.1382 0.1306 1.888663767, 2.653435035 0.01
BXD100 m 2.465 0.45881   5 0.20519 0.1861 2.086322789, 3.24215419 0.09
BXD101 f 2.0146 0.53011   3 0.30606 0.2631 1.473077036, 2.532519279 -0.55
BXD101 m 2.0867 0.69927   4 0.34963 0.3351 1.381283898, 2.73349268 -0.5
BXD102 f 2.4013 1.1525   5 0.51543 0.48 1.321560128, 4.256850126 0.06
BXD102 m 2.8089 0.45607   5 0.20396 0.1624 2.073169345, 3.309909041 0.63
BXD11 f 2.7181 0.4188   5 0.18729 0.1541 2.331568037, 3.396137756 0.57
BXD11 m 2.3519 1.0754   5 0.48095 0.4573 0.98931838, 3.71113068 -0.09
BXD13 f 2.7139 0.60725   5 0.27157 0.2238 2.207300474, 3.506542216 0.56
BXD13 m 1.9806 0.63651   5 0.28466 0.3214 1.316341793, 2.812455708 -0.67
BXD14 f 2.0034 0.44137   5 0.19739 0.2203 1.46594423, 2.476257278 -0.57
BXD14 m 1.9421 0.55462   5 0.24803 0.2856 1.349923973, 2.52954419 -0.73
BXD15 f 1.5596 0.47906   5 0.21424 0.3072 0.984778688, 2.08226527 -1.28
BXD15 m 1.3571 0.44819   5 0.20044 0.3302 0.861191763, 1.921755172 -1.64
BXD16 f 2.4599 0.82751   5 0.37007 0.3364 1.748491953, 3.737252283 0.16
BXD16 m 2.1745 0.60776   5 0.2718 0.2795 1.476205133, 2.81984045 -0.36
BXD18 f 1.6107 0.0   1   0.0 0.0 1.61073333, 1.61073333 -1.2
BXD18 m 2.7664 0.0   1   0.0 0.0 2.766363352, 2.766363352 0.56
BXD19 f 2.777 0.0   1   0.0 0.0 2.776951413, 2.776951413 0.66
BXD19 m 1.6594 0.0   1   0.0 0.0 1.659358203, 1.659358203 -1.17
BXD2 f 2.415 0.31218   5 0.13961 0.1293 2.096868368, 2.880329575 0.09
BXD2 m 2.3431 0.52982   5 0.23694 0.2261 1.860738502, 3.200903172 -0.1
BXD21 f 3.2082 0.55844   5 0.24974 0.1741 2.604676494, 3.96968905 1.35
BXD21 m 2.4635 0.56025   6 0.22872 0.2274 1.868630556, 3.461289346 0.09
BXD27 f 1.8708 0.53321   5 0.23846 0.285 1.075133031, 2.55554636 -0.78
BXD27 m 2.3475 0.56962   5 0.25474 0.2427 1.776734479, 3.162808203 -0.09
BXD28 f 2.7998 0.98519   5 0.44059 0.3519 1.407090633, 4.120277483 0.7
BXD28 m 2.9383 0.28485   5 0.12739 0.0969 2.476748177, 3.217205432 0.83
BXD31 f 1.8288 0.4892   5 0.21878 0.2675 1.253121887, 2.499277001 -0.85
BXD31 m 2.2025 0.64301   4 0.3215 0.2919 1.44643982, 2.947058773 -0.32
BXD32 f 1.9058 0.4347   5 0.1944 0.2281 1.232262435, 2.443156822 -0.73
BXD32 m 1.953 0.52014   5 0.23262 0.2663 1.502100779, 2.833650927 -0.71
BXD33 m 2.6897 0.0   1   0.0 0.0 2.689663546, 2.689663546 0.44
BXD34 f 2.601 0.0   1   0.0 0.0 2.600987049, 2.600987049 0.38
BXD34 m 2.1163 0.0   1   0.0 0.0 2.11634306, 2.11634306 -0.46
BXD39 f 2.9001 0.58874   5 0.26329 0.203 2.156331566, 3.417158174 0.86
BXD39 m 2.4667 0.57998   5 0.25937 0.2351 1.705099869, 3.191933839 0.09
BXD40 f 2.0336 0.49932   5 0.2233 0.2455 1.382029435, 2.744291856 -0.52
BXD40 m 2.6795 0.23238   5 0.10392 0.0867 2.467980987, 3.053963134 0.42
BXD42 f 2.0276 0.42546   5 0.19027 0.2098 1.386432981, 2.538503714 -0.53
BXD42 m 1.818 0.24603   5 0.11003 0.1353 1.619548549, 2.157045272 -0.92
BXD43 f 2.3745 0.83643   5 0.37406 0.3523 1.661818115, 3.734046582 0.02
BXD43 m 2.2407 0.48451   5 0.21668 0.2162 1.610427017, 2.878434974 -0.26
BXD44 f 2.1538 0.33484   5 0.14975 0.1555 1.787430966, 2.445100621 -0.33
BXD44 m 2.446 0.55341   5 0.24749 0.2263 1.847148715, 2.936177771 0.06
BXD48 f 1.9035 0.50794   5 0.22716 0.2668 1.082299631, 2.396382677 -0.73
BXD48 m 1.6577 0.74382   5 0.33265 0.4487 1.162341697, 2.956124554 -1.17
BXD49 f 2.6326 1.1109   4 0.55546 0.422 1.47331444, 3.897182616 0.43
BXD49 m 2.657 0.95798   5 0.42842 0.3606 1.661330506, 3.762807497 0.39
BXD50 f 2.0961 0.30039   5 0.13434 0.1433 1.842038647, 2.551607815 -0.42
BXD50 m 2.5881 0.68489   5 0.30629 0.2646 1.83382073, 3.619239606 0.28
BXD51 f 3.4706 1.1045   5 0.49393 0.3182 2.532453392, 4.916678318 1.77
BXD51 m 3.4138 0.85736   5 0.38342 0.2511 2.688632246, 4.718870643 1.57
BXD6 f 1.5347 0.36122   5 0.16154 0.2354 1.190493867, 2.149900471 -1.32
BXD6 m 2.0159 0.65421   4 0.32711 0.3245 1.467170003, 2.840252023 -0.61
BXD61 f 3.6527 0.58648   5 0.26228 0.1606 3.049290629, 4.404198677 2.06
BXD61 m 3.9022 0.71988   5 0.32194 0.1845 3.085803455, 4.725918221 2.33
BXD62 f 3.7497 0.56705   5 0.25359 0.1512 3.24395982, 4.675132767 2.21
BXD62 m 4.1747 1.1879   5 0.53126 0.2846 2.868072362, 5.931002447 2.76
BXD65 f 3.0358 0.78374   3 0.45249 0.2582 2.378966716, 3.90337777 1.07
BXD65 m 2.6037 0.43343   5 0.19383 0.1665 1.888085282, 3.034205748 0.31
BXD66 f 2.3542 0.16949   2   0.11985 0.072 2.234366218, 2.474065689 -0.01
BXD66 m 2.436 0.5707   2   0.40355 0.2343 2.032459514, 2.839558201 0.04
BXD68 f 1.6295 0.12803   2   0.09053 0.0786 1.538939315, 1.719998803 -1.17
BXD68 m 1.851 0.12538   3 0.07239 0.0677 1.767582585, 1.995202007 -0.87
BXD69 f 3.0625 0.79298   4 0.39649 0.2589 2.220798549, 3.962952952 1.12
BXD69 m 3.7869 0.77084   5 0.34473 0.2036 3.055922404, 4.70548802 2.15
BXD70 f 3.1449 0.57288   5 0.2562 0.1822 2.319264934, 3.884297077 1.25
BXD70 m 3.3112 0.62302   5 0.27862 0.1882 2.708250675, 4.263367641 1.41
BXD71 m 2.6976 0.0   1   0.0 0.0 2.697636688, 2.697636688 0.45
BXD73 f 1.7117 0.31566   5 0.14117 0.1844 1.350823692, 2.168514284 -1.03
BXD73 m 2.2483 0.54559   5 0.24399 0.2427 1.503065832, 2.982369677 -0.25
BXD75 f 2.6339 0.41881   5 0.1873 0.159 2.073916935, 3.059289748 0.43
BXD75 m 2.6392 0.7895   5 0.35307 0.2991 1.636461821, 3.76434375 0.36
BXD77 f 1.7571 0.73896   2   0.52252 0.4206 1.234563752, 2.279612917 -0.96
BXD77 m 1.6384 0.42973   2   0.30386 0.2623 1.33449581, 1.942223522 -1.2
BXD8 f 3.5389 1.0856   5 0.48549 0.3068 2.083040905, 4.857772246 1.88
BXD8 m 2.9256 1.1038   5 0.49362 0.3773 1.601571926, 4.433207229 0.81
BXD80 f 2.7366 0.50894   5 0.22761 0.186 1.897964196, 3.227208386 0.6
BXD80 m 2.1332 0.27025   5 0.12086 0.1267 1.701603572, 2.416840488 -0.43
BXD81 f 1.6265 0.57887   5 0.25888 0.3559 0.943738578, 2.450831887 -1.17
BXD81 m 1.6748 0.8875   5 0.3969 0.5299 0.683400311, 2.987055594 -1.15
BXD84 f 1.8546 0.67808   5 0.30325 0.3656 1.121883855, 2.908027231 -0.81
BXD84 m 1.8489 0.31908   5 0.1427 0.1726 1.397364989, 2.244421062 -0.87
BXD85 f 1.8432 0.51102   2   0.36135 0.2772 1.481885893, 2.204576741 -0.83
BXD85 m 1.9123 0.03271   2   0.02313 0.0171 1.889214343, 1.935474364 -0.77
BXD86 f 1.4997 0.53992   5 0.24146 0.36 0.93985115, 2.131243342 -1.37
BXD86 m 1.309 0.0839   4 0.04195 0.0641 1.221521933, 1.420394437 -1.72
BXD87 f 2.3166 0.45466   5 0.20333 0.1963 1.887395266, 2.949838605 -0.07
BXD87 m 2.1834 0.50481   5 0.22576 0.2312 1.889307512, 3.074589619 -0.35
BXD89 f 2.5504 0.54224   5 0.2425 0.2126 1.866636063, 3.236963368 0.3
BXD89 m 2.9305 0.5534   5 0.24749 0.1888 2.311331059, 3.789659598 0.82
BXD90 f 2.6366 1.5472   3 0.8933 0.5868 1.384705256, 4.366429353 0.44
BXD90 m 3.0779 0.73165   3 0.42242 0.2377 2.483919309, 3.895211945 1.05
BXD92 f 1.2049 0.0   1   0.0 0.0 1.204930974, 1.204930974 -1.84
BXD92 m 1.6139 0.0   1   0.0 0.0 1.613874714, 1.613874714 -1.24
BXD96 f 1.9893 0.20921   5 0.09356 0.1052 1.763736164, 2.267034782 -0.59
BXD96 m 2.291 0.79511   5 0.35558 0.3471 1.389618294, 3.434236719 -0.18
BXD97 f 1.9589 0.62175   5 0.27806 0.3174 0.945587534, 2.485182596 -0.64
BXD97 m 2.3847 0.79207   4 0.39603 0.3322 1.624544572, 3.27897711 -0.04
BXD98 f 2.4461 1.4045   2   0.99312 0.5742 1.452974474, 3.439212382 0.14
BXD98 m 2.0788 0.56944   4 0.28472 0.2739 1.438610151, 2.701160712 -0.51
C57BL/6J f 3.8356 0.78935   5 0.35301 0.2058 3.185211551, 5.158489035 2.35
C57BL/6J m 4.1289 1.1074   5 0.49524 0.2682 2.219879715, 4.882568696 2.69
DBA/2J f 1.9691 0.64151   5 0.28689 0.3258 1.381062007, 2.919714783 -0.62
DBA/2J m 2.0071 0.54457   5 0.24354 0.2713 1.468904524, 2.86852492 -0.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 2.3662 0.2933 2.943 1.7894
BXD100 m 2.465 0.2933 3.0418 1.8882
BXD101 f 2.0146 0.3786 2.7592 1.2699
BXD101 m 2.0867 0.3279 2.7316 1.4418
BXD102 f 2.4013 0.2933 2.9781 1.8244
BXD102 m 2.8089 0.2933 3.3857 2.232
BXD11 f 2.7181 0.2933 3.295 2.1413
BXD11 m 2.3519 0.2933 2.9288 1.7751
BXD13 f 2.7139 0.2933 3.2908 2.1371
BXD13 m 1.9806 0.2933 2.5575 1.4038
BXD14 f 2.0034 0.2933 2.5803 1.4266
BXD14 m 1.9421 0.2933 2.5189 1.3653
BXD15 f 1.5596 0.2933 2.1364 0.9827
BXD15 m 1.3571 0.2933 1.934 0.7803
BXD16 f 2.4599 0.2933 3.0367 1.8831
BXD16 m 2.1745 0.2933 2.7513 1.5977
BXD2 f 2.415 0.2933 2.9919 1.8382
BXD2 m 2.3431 0.2933 2.9199 1.7662
BXD21 f 3.2082 0.2933 3.785 2.6314
BXD21 m 2.4635 0.2677 2.9901 1.937
BXD27 f 1.8708 0.2933 2.4476 1.2939
BXD27 m 2.3475 0.2933 2.9243 1.7707
BXD28 f 2.7998 0.2933 3.3766 2.223
BXD28 m 2.9383 0.2933 3.5151 2.3614
BXD31 f 1.8288 0.2933 2.4056 1.2519
BXD31 m 2.2025 0.3279 2.8474 1.5576
BXD32 f 1.9058 0.2933 2.4827 1.329
BXD32 m 1.953 0.2933 2.5299 1.3762
BXD39 f 2.9001 0.2933 3.4769 2.3232
BXD39 m 2.4667 0.2933 3.0436 1.8899
BXD40 f 2.0336 0.2933 2.6104 1.4568
BXD40 m 2.6795 0.2933 3.2563 2.1026
BXD42 f 2.0276 0.2933 2.6044 1.4507
BXD42 m 1.818 0.2933 2.3948 1.2411
BXD43 f 2.3745 0.2933 2.9513 1.7977
BXD43 m 2.2407 0.2933 2.8176 1.6639
BXD44 f 2.1538 0.2933 2.7306 1.577
BXD44 m 2.446 0.2933 3.0228 1.8691
BXD48 f 1.9035 0.2933 2.4803 1.3267
BXD48 m 1.6577 0.2933 2.2345 1.0808
BXD49 f 2.6326 0.3279 3.2776 1.9877
BXD49 m 2.657 0.2933 3.2338 2.0801
BXD50 f 2.0961 0.2933 2.673 1.5193
BXD50 m 2.5881 0.2933 3.1649 2.0113
BXD51 f 3.4706 0.2933 4.0475 2.8938
BXD51 m 3.4138 0.2933 3.9906 2.837
BXD6 f 1.5347 0.2933 2.1115 0.9579
BXD6 m 2.0159 0.3279 2.6609 1.371
BXD61 f 3.6527 0.2933 4.2295 3.0759
BXD61 m 3.9022 0.2933 4.4791 3.3254
BXD62 f 3.7497 0.2933 4.3266 3.1729
BXD62 m 4.1747 0.2933 4.7515 3.5978
BXD65 f 3.0358 0.3786 3.7805 2.2911
BXD65 m 2.6037 0.2933 3.1805 2.0269
BXD66 f 2.3542 0.4637 3.2663 1.4422
BXD66 m 2.436 0.4637 3.3481 1.524
BXD68 f 1.6295 0.4637 2.5415 0.7174
BXD68 m 1.851 0.3786 2.5957 1.1063
BXD69 f 3.0625 0.3279 3.7074 2.4176
BXD69 m 3.7869 0.2933 4.3637 3.21
BXD70 f 3.1449 0.2933 3.7217 2.5681
BXD70 m 3.3112 0.2933 3.888 2.7343
BXD73 f 1.7117 0.2933 2.2885 1.1349
BXD73 m 2.2483 0.2933 2.8251 1.6715
BXD75 f 2.6339 0.2933 3.2107 2.057
BXD75 m 2.6392 0.2933 3.216 2.0623
BXD77 f 1.7571 0.4637 2.6691 0.845
BXD77 m 1.6384 0.4637 2.5504 0.7263
BXD8 f 3.5389 0.2933 4.1157 2.962
BXD8 m 2.9256 0.2933 3.5024 2.3487
BXD80 f 2.7366 0.2933 3.3134 2.1598
BXD80 m 2.1332 0.2933 2.71 1.5564
BXD81 f 1.6265 0.2933 2.2033 1.0496
BXD81 m 1.6748 0.2933 2.2516 1.098
BXD84 f 1.8546 0.2933 2.4314 1.2777
BXD84 m 1.8489 0.2933 2.4257 1.272
BXD85 f 1.8432 0.4637 2.7553 0.9312
BXD85 m 1.9123 0.4637 2.8244 1.0003
BXD86 f 1.4997 0.2933 2.0766 0.9229
BXD86 m 1.309 0.3279 1.9539 0.664
BXD87 f 2.3166 0.2933 2.8934 1.7397
BXD87 m 2.1834 0.2933 2.7602 1.6065
BXD89 f 2.5504 0.2933 3.1273 1.9736
BXD89 m 2.9305 0.2933 3.5073 2.3537
BXD90 f 2.6366 0.3786 3.3813 1.8919
BXD90 m 3.0779 0.3786 3.8226 2.3333
BXD96 f 1.9893 0.2933 2.5661 1.4125
BXD96 m 2.291 0.2933 2.8679 1.7142
BXD97 f 1.9589 0.2933 2.5357 1.3821
BXD97 m 2.3847 0.3279 3.0296 1.7397
BXD98 f 2.4461 0.4637 3.3581 1.534
BXD98 m 2.0788 0.3279 2.7237 1.4339
C57BL/6J f 3.8356 0.2933 4.4124 3.2588
C57BL/6J m 4.1289 0.2933 4.7058 3.5521
DBA/2J f 1.9691 0.2933 2.546 1.3923
DBA/2J m 2.0071 0.2933 2.5839 1.4303


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 2.4156 0.2074 2.8235 2.0077
BXD101 both 2.0506 0.2504 2.5432 1.5581
BXD102 both 2.6051 0.2074 3.0129 2.1972
BXD11 both 2.535 0.2074 2.9429 2.1272
BXD13 both 2.3473 0.2074 2.7552 1.9394
BXD14 both 1.9728 0.2074 2.3806 1.5649
BXD15 both 1.4584 0.2074 1.8662 1.0505
BXD16 both 2.3172 0.2074 2.7251 1.9093
BXD2 both 2.379 0.2074 2.7869 1.9712
BXD21 both 2.8359 0.1985 3.2264 2.4453
BXD27 both 2.1091 0.2074 2.517 1.7012
BXD28 both 2.869 0.2074 3.2769 2.4612
BXD31 both 2.0156 0.22 2.4483 1.583
BXD32 both 1.9294 0.2074 2.3373 1.5215
BXD39 both 2.6834 0.2074 3.0913 2.2755
BXD40 both 2.3565 0.2074 2.7644 1.9486
BXD42 both 1.9228 0.2074 2.3306 1.5149
BXD43 both 2.3076 0.2074 2.7155 1.8997
BXD44 both 2.2999 0.2074 2.7078 1.892
BXD48 both 1.7806 0.2074 2.1885 1.3727
BXD49 both 2.6448 0.22 3.0774 2.2122
BXD50 both 2.3421 0.2074 2.75 1.9342
BXD51 both 3.4422 0.2074 3.8501 3.0343
BXD6 both 1.7753 0.22 2.208 1.3427
BXD61 both 3.7775 0.2074 4.1854 3.3696
BXD62 both 3.9622 0.2074 4.3701 3.5543
BXD65 both 2.8198 0.2395 3.2907 2.3488
BXD66 both 2.3951 0.3279 3.04 1.7502
BXD68 both 1.7402 0.2993 2.329 1.1515
BXD69 both 3.4247 0.22 3.8573 2.9921
BXD70 both 3.228 0.2074 3.6359 2.8202
BXD73 both 1.98 0.2074 2.3879 1.5721
BXD75 both 2.6365 0.2074 3.0444 2.2286
BXD77 both 1.6977 0.3279 2.3426 1.0528
BXD8 both 3.2322 0.2074 3.6401 2.8243
BXD80 both 2.4349 0.2074 2.8428 2.027
BXD81 both 1.6506 0.2074 2.0585 1.2427
BXD84 both 1.8517 0.2074 2.2596 1.4438
BXD85 both 1.8778 0.3279 2.5227 1.2329
BXD86 both 1.4043 0.22 1.837 0.9717
BXD87 both 2.25 0.2074 2.6578 1.8421
BXD89 both 2.7405 0.2074 3.1484 2.3326
BXD90 both 2.8573 0.2677 3.3839 2.3307
BXD96 both 2.1402 0.2074 2.548 1.7323
BXD97 both 2.1718 0.22 2.6044 1.7392
BXD98 both 2.2625 0.284 2.821 1.7039
C57BL/6J both 3.9823 0.2074 4.3901 3.5744
DBA/2J both 1.9881 0.2074 2.396 1.5802




  GWAS USING LINEAR MIXED MODELS