Project measure / variable:   Crusio1   lean

ID, description, units MPD:62009   lean   number of leanings against wall, 20 min test   [n]  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 10-12wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Crusio1 - number of leanings against wall, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested54 strains55 strains
Mean of the strain means76.91   n 78.35   n
Median of the strain means73.1   n 75.9   n
SD of the strain means± 23.347 ± 23.443
Coefficient of variation (CV)0.3036 0.2992
Min–max range of strain means34.0   –   161.7   n 6.0   –   139.0   n
Mean sample size per strain8.4   mice 8.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 125.1338 125.1338 0.151 0.6977
strain 52 364137.6921 7002.6479 8.4492 < 0.0001
sex:strain 52 42178.5133 811.1253 0.9787 0.5186
Residuals 804 666347.1893 828.79


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 53.0 4.2426   2   3.0 0.08 50.0, 56.0 -1.02
BXD1 m 6.0 2.8284   2   2.0 0.4714 4.0, 8.0 -3.09
BXD100 f 60.3 22.735   10 7.1896 0.377 28.0, 94.0 -0.71
BXD100 m 60.7 14.499   10 4.5851 0.2389 39.0, 78.0 -0.75
BXD101 f 161.7 30.703   6 12.534 0.1899 125.0, 204.0 3.63
BXD101 m 134.6 46.522   8 16.448 0.3456 53.0, 185.0 2.4
BXD102 f 78.6 14.968   10 4.7333 0.1904 51.0, 103.0 0.07
BXD102 m 90.3 20.358   10 6.4378 0.2255 55.0, 119.0 0.51
BXD11 f 55.8 21.699   10 6.8618 0.3889 31.0, 107.0 -0.9
BXD11 m 54.0 19.009   10 6.0111 0.352 27.0, 80.0 -1.04
BXD13 f 77.1 20.84   10 6.5903 0.2703 49.0, 103.0 0.01
BXD13 m 90.7 16.077   10 5.0839 0.1772 64.0, 118.0 0.53
BXD14 f 52.8 14.413   10 4.5578 0.273 36.0, 75.0 -1.03
BXD14 m 47.3 16.506   10 5.2197 0.349 14.0, 64.0 -1.32
BXD15 f 59.8 32.058   10 10.138 0.5361 13.0, 103.0 -0.73
BXD15 m 69.3 24.743   10 7.8245 0.357 37.0, 108.0 -0.39
BXD16 f 57.3 21.427   10 6.7759 0.3739 32.0, 95.0 -0.84
BXD16 m 50.1 18.315   10 5.7917 0.3656 21.0, 84.0 -1.21
BXD18 f 81.5 12.021   2   8.5 0.1475 73.0, 90.0 0.2
BXD18 m 98.5 4.9497   2   3.5 0.0503 95.0, 102.0 0.86
BXD19 f 97.5 3.5355   2   2.5 0.0363 95.0, 100.0 0.88
BXD19 m 100.0 9.8995   2   7.0 0.099 93.0, 107.0 0.92
BXD2 f 75.5 22.917   10 7.2468 0.3035 45.0, 114.0 -0.06
BXD2 m 68.3 19.839   10 6.2735 0.2905 33.0, 97.0 -0.43
BXD21 f 91.9 37.311   10 11.799 0.406 63.0, 188.0 0.64
BXD21 m 75.9 17.182   10 5.4333 0.2264 43.0, 103.0 -0.1
BXD27 f 50.0 41.422   10 13.099 0.8284 10.0, 144.0 -1.15
BXD27 m 72.6 30.27   10 9.5722 0.4169 36.0, 123.0 -0.25
BXD28 f 51.2 11.555   10 3.6539 0.2257 34.0, 63.0 -1.1
BXD28 m 44.2 14.07   10 4.4492 0.3183 21.0, 64.0 -1.46
BXD31 f 74.4 21.803   10 6.8948 0.2931 31.0, 100.0 -0.11
BXD31 m 62.6 20.184   10 6.3826 0.3224 32.0, 97.0 -0.67
BXD32 f 118.2 55.4   10 17.518 0.4687 76.0, 260.0 1.77
BXD32 m 120.7 27.492   10 8.6936 0.2278 75.0, 181.0 1.81
BXD33 f 58.0 0.0   1   0.0 0.0 58.0, 58.0 -0.81
BXD33 m 62.0 0.0   1   0.0 0.0 62.0, 62.0 -0.7
BXD34 f 64.0 7.0711   2   5.0 0.1105 59.0, 69.0 -0.55
BXD34 m 73.5 14.849   2   10.5 0.202 63.0, 84.0 -0.21
BXD39 f 61.3 10.995   10 3.4771 0.1794 44.0, 82.0 -0.67
BXD39 m 68.5 20.288   10 6.4157 0.2962 36.0, 100.0 -0.42
BXD40 f 99.7 63.88   10 20.2 0.6407 0.98
BXD40 m 112.4 45.865   10 14.504 0.4081 46.0, 209.0 1.45
BXD42 f 97.2 34.247   10 10.83 0.3523 67.0, 182.0 0.87
BXD42 m 89.9 15.213   10 4.8108 0.1692 73.0, 112.0 0.49
BXD43 f 65.0 38.0   10 12.017 0.5846 26.0, 146.0 -0.51
BXD43 m 83.9 45.987   10 14.542 0.5481 24.0, 155.0 0.24
BXD44 f 113.7 34.387   10 10.874 0.3024 72.0, 168.0 1.58
BXD44 m 100.3 46.188   10 14.606 0.4605 52.0, 189.0 0.94
BXD48 f 57.2 24.765   10 7.8313 0.4329 22.0, 98.0 -0.84
BXD48 m 63.9 25.458   10 8.0505 0.3984 24.0, 104.0 -0.62
BXD49 f 80.4 24.066   10 7.6102 0.2993 49.0, 121.0 0.15
BXD49 m 75.7 22.425   10 7.0915 0.2962 34.0, 121.0 -0.11
BXD50 f 122.2 37.133   10 11.742 0.3039 76.0, 188.0 1.94
BXD50 m 86.4 43.783   10 13.845 0.5067 2.0, 155.0 0.34
BXD51 f 95.0 25.162   10 7.9568 0.2649 67.0, 141.0 0.77
BXD51 m 85.4 20.828   10 6.5865 0.2439 58.0, 126.0 0.3
BXD6 f 75.5 33.474   10 10.585 0.4434 44.0, 164.0 -0.06
BXD6 m 67.6 19.403   10 6.1359 0.287 44.0, 109.0 -0.46
BXD61 f 84.6 20.5   10 6.4828 0.2423 50.0, 117.0 0.33
BXD61 m 107.8 35.439   10 11.207 0.3288 57.0, 159.0 1.26
BXD62 f 58.9 35.763   10 11.309 0.6072 2.0, 114.0 -0.77
BXD62 m 48.5 24.977   10 7.8983 0.515 -1.27
BXD65 f 69.83 9.1305   6 3.7275 0.1307 58.0, 84.0 -0.3
BXD65 m 65.3 19.009   10 6.0112 0.2911 39.0, 97.0 -0.56
BXD66 f 34.0 18.239   4 9.1196 0.5364 11.0, 51.0 -1.84
BXD66 m 46.75 5.5603   4 2.7801 0.1189 41.0, 52.0 -1.35
BXD68 f 81.25 33.974   4 16.987 0.4181 42.0, 120.0 0.19
BXD68 m 89.5 22.863   6 9.3336 0.2554 56.0, 114.0 0.48
BXD69 f 116.4 27.694   10 8.7575 0.2379 76.0, 169.0 1.69
BXD69 m 96.7 41.007   10 12.968 0.4241 19.0, 164.0 0.78
BXD70 f 62.7 15.341   10 4.8512 0.2447 31.0, 91.0 -0.61
BXD70 m 82.9 18.052   10 5.7086 0.2178 58.0, 108.0 0.19
BXD71 m 139.0 32.527   2   23.0 0.234 116.0, 162.0 2.59
BXD73 f 92.7 29.642   10 9.3738 0.3198 38.0, 141.0 0.68
BXD73 m 84.9 29.909   10 9.458 0.3523 47.0, 125.0 0.28
BXD75 f 71.8 32.71   10 10.344 0.4556 18.0, 120.0 -0.22
BXD75 m 87.3 31.38   10 9.9231 0.3594 59.0, 160.0 0.38
BXD77 f 42.75 26.311   4 13.155 0.6155 11.0, 71.0 -1.46
BXD77 m 39.75 16.978   4 8.489 0.4271 18.0, 59.0 -1.65
BXD8 f 88.8 18.648   10 5.8969 0.21 58.0, 119.0 0.51
BXD8 m 87.4 19.716   10 6.2347 0.2256 67.0, 129.0 0.39
BXD80 f 71.2 20.552   10 6.4992 0.2887 42.0, 96.0 -0.24
BXD80 m 96.9 23.449   10 7.4154 0.242 50.0, 143.0 0.79
BXD81 f 70.0 18.421   10 5.8252 0.2632 53.0, 115.0 -0.3
BXD81 m 72.6 44.255   10 13.995 0.6096 23.0, 161.0 -0.25
BXD84 f 53.6 20.555   10 6.4999 0.3835 34.0, 95.0 -1.0
BXD84 m 69.2 20.493   10 6.4804 0.2961 22.0, 95.0 -0.39
BXD85 f 71.75 24.527   4 12.264 0.3418 36.0, 90.0 -0.22
BXD85 m 57.25 31.394   4 15.697 0.5484 33.0, 101.0 -0.9
BXD86 f 60.8 28.847   10 9.1224 0.4745 30.0, 112.0 -0.69
BXD86 m 71.4 24.546   10 7.762 0.3438 36.0, 101.0 -0.3
BXD87 f 57.8 19.882   10 6.2872 0.344 18.0, 91.0 -0.82
BXD87 m 64.7 23.763   10 7.5145 0.3673 29.0, 112.0 -0.58
BXD89 f 88.2 27.64   10 8.7405 0.3134 59.0, 142.0 0.48
BXD89 m 92.7 28.663   10 9.064 0.3092 74.0, 169.0 0.61
BXD90 f 87.83 29.471   6 12.032 0.3355 63.0, 143.0 0.47
BXD90 m 94.0 26.184   6 10.69 0.2786 61.0, 132.0 0.67
BXD92 f 61.5 30.406   2   21.5 0.4944 40.0, 83.0 -0.66
BXD92 m 65.67 22.546   3 13.017 0.3433 44.0, 89.0 -0.54
BXD96 f 104.4 29.923   10 9.4624 0.2866 57.0, 149.0 1.18
BXD96 m 97.4 56.26   10 17.79 0.5776 20.0, 211.0 0.81
BXD97 f 80.9 36.247   10 11.462 0.4481 40.0, 142.0 0.17
BXD97 m 91.3 29.477   10 9.3215 0.3229 56.0, 129.0 0.55
BXD98 f 63.67 19.459   6 7.9443 0.3056 30.0, 79.0 -0.57
BXD98 m 76.57 18.347   7 6.9346 0.2396 61.0, 114.0 -0.08
C57BL/6J f 83.3 34.264   10 10.835 0.4113 52.0, 162.0 0.27
C57BL/6J m 73.5 18.549   10 5.8656 0.2524 47.0, 111.0 -0.21
DBA/2J f 108.8 37.416   10 11.832 0.3439 54.0, 175.0 1.37
DBA/2J m 95.1 22.502   10 7.1156 0.2366 59.0, 144.0 0.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 f 53.0 20.3567 92.9585 13.0415
BXD1 m 6.0 20.3567 45.9585 -33.9585
BXD100 f 60.3 9.1038 78.17 42.43
BXD100 m 60.7 9.1038 78.57 42.83
BXD101 f 161.6667 11.7529 184.7367 138.5966
BXD101 m 134.625 10.1783 154.6043 114.6457
BXD102 f 78.6 9.1038 96.47 60.73
BXD102 m 90.3 9.1038 108.17 72.43
BXD11 f 55.8 9.1038 73.67 37.93
BXD11 m 54.0 9.1038 71.87 36.13
BXD13 f 77.1 9.1038 94.97 59.23
BXD13 m 90.7 9.1038 108.57 72.83
BXD14 f 52.8 9.1038 70.67 34.93
BXD14 m 47.3 9.1038 65.17 29.43
BXD15 f 59.8 9.1038 77.67 41.93
BXD15 m 69.3 9.1038 87.17 51.43
BXD16 f 57.3 9.1038 75.17 39.43
BXD16 m 50.1 9.1038 67.97 32.23
BXD18 f 81.5 20.3567 121.4585 41.5415
BXD18 m 98.5 20.3567 138.4585 58.5415
BXD19 f 97.5 20.3567 137.4585 57.5415
BXD19 m 100.0 20.3567 139.9585 60.0415
BXD2 f 75.5 9.1038 93.37 57.63
BXD2 m 68.3 9.1038 86.17 50.43
BXD21 f 91.9 9.1038 109.77 74.03
BXD21 m 75.9 9.1038 93.77 58.03
BXD27 f 50.0 9.1038 67.87 32.13
BXD27 m 72.6 9.1038 90.47 54.73
BXD28 f 51.2 9.1038 69.07 33.33
BXD28 m 44.2 9.1038 62.07 26.33
BXD31 f 74.4 9.1038 92.27 56.53
BXD31 m 62.6 9.1038 80.47 44.73
BXD32 f 118.2 9.1038 136.07 100.33
BXD32 m 120.7 9.1038 138.57 102.83
BXD34 f 64.0 20.3567 103.9585 24.0415
BXD34 m 73.5 20.3567 113.4585 33.5415
BXD39 f 61.3 9.1038 79.17 43.43
BXD39 m 68.5 9.1038 86.37 50.63
BXD40 f 99.7 9.1038 117.57 81.83
BXD40 m 112.4 9.1038 130.27 94.53
BXD42 f 97.2 9.1038 115.07 79.33
BXD42 m 89.9 9.1038 107.77 72.03
BXD43 f 65.0 9.1038 82.87 47.13
BXD43 m 83.9 9.1038 101.77 66.03
BXD44 f 113.7 9.1038 131.57 95.83
BXD44 m 100.3 9.1038 118.17 82.43
BXD48 f 57.2 9.1038 75.07 39.33
BXD48 m 63.9 9.1038 81.77 46.03
BXD49 f 80.4 9.1038 98.27 62.53
BXD49 m 75.7 9.1038 93.57 57.83
BXD50 f 122.2 9.1038 140.07 104.33
BXD50 m 86.4 9.1038 104.27 68.53
BXD51 f 95.0 9.1038 112.87 77.13
BXD51 m 85.4 9.1038 103.27 67.53
BXD6 f 75.5 9.1038 93.37 57.63
BXD6 m 67.6 9.1038 85.47 49.73
BXD61 f 84.6 9.1038 102.47 66.73
BXD61 m 107.8 9.1038 125.67 89.93
BXD62 f 58.9 9.1038 76.77 41.03
BXD62 m 48.5 9.1038 66.37 30.63
BXD65 f 69.8333 11.7529 92.9034 46.7633
BXD65 m 65.3 9.1038 83.17 47.43
BXD66 f 34.0 14.3944 62.255 5.745
BXD66 m 46.75 14.3944 75.005 18.495
BXD68 f 81.25 14.3944 109.505 52.995
BXD68 m 89.5 11.7529 112.5701 66.4299
BXD69 f 116.4 9.1038 134.27 98.53
BXD69 m 96.7 9.1038 114.57 78.83
BXD70 f 62.7 9.1038 80.57 44.83
BXD70 m 82.9 9.1038 100.77 65.03
BXD73 f 92.7 9.1038 110.57 74.83
BXD73 m 84.9 9.1038 102.77 67.03
BXD75 f 71.8 9.1038 89.67 53.93
BXD75 m 87.3 9.1038 105.17 69.43
BXD77 f 42.75 14.3944 71.005 14.495
BXD77 m 39.75 14.3944 68.005 11.495
BXD8 f 88.8 9.1038 106.67 70.93
BXD8 m 87.4 9.1038 105.27 69.53
BXD80 f 71.2 9.1038 89.07 53.33
BXD80 m 96.9 9.1038 114.77 79.03
BXD81 f 70.0 9.1038 87.87 52.13
BXD81 m 72.6 9.1038 90.47 54.73
BXD84 f 53.6 9.1038 71.47 35.73
BXD84 m 69.2 9.1038 87.07 51.33
BXD85 f 71.75 14.3944 100.005 43.495
BXD85 m 57.25 14.3944 85.505 28.995
BXD86 f 60.8 9.1038 78.67 42.93
BXD86 m 71.4 9.1038 89.27 53.53
BXD87 f 57.8 9.1038 75.67 39.93
BXD87 m 64.7 9.1038 82.57 46.83
BXD89 f 88.2 9.1038 106.07 70.33
BXD89 m 92.7 9.1038 110.57 74.83
BXD90 f 87.8333 11.7529 110.9034 64.7633
BXD90 m 94.0 11.7529 117.0701 70.9299
BXD92 f 61.5 20.3567 101.4585 21.5415
BXD92 m 65.6667 16.6212 98.2927 33.0407
BXD96 f 104.4 9.1038 122.27 86.53
BXD96 m 97.4 9.1038 115.27 79.53
BXD97 f 80.9 9.1038 98.77 63.03
BXD97 m 91.3 9.1038 109.17 73.43
BXD98 f 63.6667 11.7529 86.7367 40.5966
BXD98 m 76.5714 10.8811 97.9302 55.2127
C57BL/6J f 83.3 9.1038 101.17 65.43
C57BL/6J m 73.5 9.1038 91.37 55.63
DBA/2J f 108.8 9.1038 126.67 90.93
DBA/2J m 95.1 9.1038 112.97 77.23


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD1 both 29.5 14.3944 57.755 1.245
BXD100 both 60.5 6.4374 73.136 47.864
BXD101 both 148.1458 7.7738 163.4053 132.8864
BXD102 both 84.45 6.4374 97.086 71.814
BXD11 both 54.9 6.4374 67.536 42.264
BXD13 both 83.9 6.4374 96.536 71.264
BXD14 both 50.05 6.4374 62.686 37.414
BXD15 both 64.55 6.4374 77.186 51.914
BXD16 both 53.7 6.4374 66.336 41.064
BXD18 both 90.0 14.3944 118.255 61.745
BXD19 both 98.75 14.3944 127.005 70.495
BXD2 both 71.9 6.4374 84.536 59.264
BXD21 both 83.9 6.4374 96.536 71.264
BXD27 both 61.3 6.4374 73.936 48.664
BXD28 both 47.7 6.4374 60.336 35.064
BXD31 both 68.5 6.4374 81.136 55.864
BXD32 both 119.45 6.4374 132.086 106.814
BXD34 both 68.75 14.3944 97.005 40.495
BXD39 both 64.9 6.4374 77.536 52.264
BXD40 both 106.05 6.4374 118.686 93.414
BXD42 both 93.55 6.4374 106.186 80.914
BXD43 both 74.45 6.4374 87.086 61.814
BXD44 both 107.0 6.4374 119.636 94.364
BXD48 both 60.55 6.4374 73.186 47.914
BXD49 both 78.05 6.4374 90.686 65.414
BXD50 both 104.3 6.4374 116.936 91.664
BXD51 both 90.2 6.4374 102.836 77.564
BXD6 both 71.55 6.4374 84.186 58.914
BXD61 both 96.2 6.4374 108.836 83.564
BXD62 both 53.7 6.4374 66.336 41.064
BXD65 both 67.5667 7.4332 82.1575 52.9759
BXD66 both 40.375 10.1783 60.3543 20.3957
BXD68 both 85.375 9.2915 103.6135 67.1365
BXD69 both 106.55 6.4374 119.186 93.914
BXD70 both 72.8 6.4374 85.436 60.164
BXD73 both 88.8 6.4374 101.436 76.164
BXD75 both 79.55 6.4374 92.186 66.914
BXD77 both 41.25 10.1783 61.2293 21.2707
BXD8 both 88.1 6.4374 100.736 75.464
BXD80 both 84.05 6.4374 96.686 71.414
BXD81 both 71.3 6.4374 83.936 58.664
BXD84 both 61.4 6.4374 74.036 48.764
BXD85 both 64.5 10.1783 84.4793 44.5207
BXD86 both 66.1 6.4374 78.736 53.464
BXD87 both 61.25 6.4374 73.886 48.614
BXD89 both 90.45 6.4374 103.086 77.814
BXD90 both 90.9167 8.3106 107.2297 74.6037
BXD92 both 63.5833 13.1402 89.3765 37.7902
BXD96 both 100.9 6.4374 113.536 88.264
BXD97 both 86.1 6.4374 98.736 73.464
BXD98 both 70.119 8.0083 85.8387 54.3994
C57BL/6J both 78.4 6.4374 91.036 65.764
DBA/2J both 101.95 6.4374 114.586 89.314




  GWAS USING LINEAR MIXED MODELS