Project measure / variable:   Kliethermes1   alternation_Y

ID, description, units MPD:59951   alternation_Y   alternations during spontaneous alternation task to assess novelty seeking (0=same arm, 1=alternate arm)   [n]  
Data set, strains Kliethermes1   inbred   14 strains     sex: both     age: 8wks
Procedure Y-maze
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  STRAIN COMPARISON PLOT
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Kliethermes1 - alternations during spontaneous alternation task to assess novelty seeking (0=same arm, 1=alternate arm)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means0.658   n 0.686   n
Median of the strain means0.667   n 0.667   n
SD of the strain means± 0.121 ± 0.173
Coefficient of variation (CV)0.184 0.252
Min–max range of strain means0.500   –   0.833   n 0.500   –   1.00   n
Mean sample size per strain6.4   mice 6.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0006 0.0006 0.0025 0.9604
strain 13 1.7609 0.1355 0.5705 0.8748
sex:strain 13 1.9324 0.1486 0.6261 0.8297
Residuals 159 37.75 0.2374


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.667 0.516   6 0.211 0.775 0.07
129S1/SvImJ m 1.0 0.0   5 0.0 0.0 1.0, 1.0 1.82
A/J f 0.5 0.548   6 0.224 1.1 -1.31
A/J m 0.833 0.408   6 0.167 0.49 0.85
AKR/J f 0.5 0.548   6 0.224 1.1 -1.31
AKR/J m 0.833 0.408   6 0.167 0.49 0.85
BALB/cByJ f 0.8 0.447   5 0.2 0.559 1.17
BALB/cByJ m 0.667 0.516   6 0.211 0.775 -0.11
BTBR T+ Itpr3tf/J f 0.5 0.548   6 0.224 1.1 -1.31
BTBR T+ Itpr3tf/J m 0.5 0.548   6 0.224 1.1 -1.08
C3H/HeJ f 0.667 0.516   6 0.211 0.775 0.07
C3H/HeJ m 1.0 0.0   6 0.0 0.0 1.0, 1.0 1.82
C57BL/6J f 0.833 0.389   12 0.112 0.467 1.44
C57BL/6J m 0.667 0.492   12 0.142 0.739 -0.11
C57L/J f 0.667 0.516   6 0.211 0.775 0.07
C57L/J m 0.667 0.516   6 0.211 0.775 -0.11
DBA/2J f 0.667 0.492   12 0.142 0.739 0.07
DBA/2J m 0.5 0.522   12 0.151 1.04 -1.08
FVB/NJ f 0.667 0.516   6 0.211 0.775 0.07
FVB/NJ m 0.5 0.548   6 0.224 1.1 -1.08
NOD/ShiLtJ f 0.5 0.548   6 0.224 1.1 -1.31
NOD/ShiLtJ m 0.5 0.548   6 0.224 1.1 -1.08
NZB/BlNJ f 0.667 0.516   6 0.211 0.775 0.07
NZB/BlNJ m 0.667 0.516   6 0.211 0.775 -0.11
PERA/EiJ f 0.75 0.5   4 0.25 0.667 0.76
PERA/EiJ m 0.667 0.516   6 0.211 0.775 -0.11
PL/J f 0.833 0.408   6 0.167 0.49 1.44
PL/J m 0.6 0.548   5 0.245 0.913 -0.5


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.6667 0.1989 1.0595 0.2738
129S1/SvImJ m 1.0 0.2179 1.4304 0.5696
A/J f 0.5 0.1989 0.8929 0.1071
A/J m 0.8333 0.1989 1.2262 0.4405
AKR/J f 0.5 0.1989 0.8929 0.1071
AKR/J m 0.8333 0.1989 1.2262 0.4405
BALB/cByJ f 0.8 0.2179 1.2304 0.3696
BALB/cByJ m 0.6667 0.1989 1.0595 0.2738
BTBR T+ Itpr3tf/J f 0.5 0.1989 0.8929 0.1071
BTBR T+ Itpr3tf/J m 0.5 0.1989 0.8929 0.1071
C3H/HeJ f 0.6667 0.1989 1.0595 0.2738
C3H/HeJ m 1.0 0.1989 1.3929 0.6071
C57BL/6J f 0.8333 0.1407 1.1111 0.5555
C57BL/6J m 0.6667 0.1407 0.9445 0.3889
C57L/J f 0.6667 0.1989 1.0595 0.2738
C57L/J m 0.6667 0.1989 1.0595 0.2738
DBA/2J f 0.6667 0.1407 0.9445 0.3889
DBA/2J m 0.5 0.1407 0.7778 0.2222
FVB/NJ f 0.6667 0.1989 1.0595 0.2738
FVB/NJ m 0.5 0.1989 0.8929 0.1071
NOD/ShiLtJ f 0.5 0.1989 0.8929 0.1071
NOD/ShiLtJ m 0.5 0.1989 0.8929 0.1071
NZB/BlNJ f 0.6667 0.1989 1.0595 0.2738
NZB/BlNJ m 0.6667 0.1989 1.0595 0.2738
PERA/EiJ f 0.75 0.2436 1.2312 0.2688
PERA/EiJ m 0.6667 0.1989 1.0595 0.2738
PL/J f 0.8333 0.1989 1.2262 0.4405
PL/J m 0.6 0.2179 1.0304 0.1696


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.8333 0.1475 1.1247 0.542
A/J both 0.6667 0.1407 0.9445 0.3889
AKR/J both 0.6667 0.1407 0.9445 0.3889
BALB/cByJ both 0.7333 0.1475 1.0247 0.442
BTBR T+ Itpr3tf/J both 0.5 0.1407 0.7778 0.2222
C3H/HeJ both 0.8333 0.1407 1.1111 0.5555
C57BL/6J both 0.75 0.0995 0.9464 0.5536
C57L/J both 0.6667 0.1407 0.9445 0.3889
DBA/2J both 0.5833 0.0995 0.7798 0.3869
FVB/NJ both 0.5833 0.1407 0.8611 0.3055
NOD/ShiLtJ both 0.5 0.1407 0.7778 0.2222
NZB/BlNJ both 0.6667 0.1407 0.9445 0.3889
PERA/EiJ both 0.7083 0.1573 1.0189 0.3977
PL/J both 0.7167 0.1475 1.008 0.4253




  GWAS USING LINEAR MIXED MODELS