Project measure / variable:   Kliethermes1   time_HD

ID, description, units MPD:59934   time_HD   time spent head dipping in head dip task to assess novelty seeking, 10 min test   [s]  
Data set, strains Kliethermes1   inbred   14 strains     sex: both     age: 8wks
Procedure hole board test
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  STRAIN COMPARISON PLOT
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Kliethermes1 - time spent head dipping in head dip task to assess novelty seeking, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means40.0   s 35.5   s
Median of the strain means40.6   s 36.0   s
SD of the strain means± 27.5 ± 15.6
Coefficient of variation (CV)0.687 0.440
Min–max range of strain means0.483   –   90.3   s 10.4   –   59.2   s
Mean sample size per strain6.3   mice 6.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 766.5481 766.5481 2.6505 0.1055
strain 13 70106.5603 5392.8123 18.6467 < 0.0001
sex:strain 13 7224.7585 555.7507 1.9216 0.0312
Residuals 159 45984.3312 289.2096


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 11.7 9.13   6 3.73 0.779 -1.03
129S1/SvImJ m 29.4 13.2   6 5.41 0.45 16.0, 45.8 -0.39
A/J f 0.483 0.765   6 0.312 1.58 -1.44
A/J m 10.4 9.32   6 3.81 0.898 2.5, 24.8 -1.6
AKR/J f 46.8 14.0   6 5.71 0.299 31.7, 64.5 0.25
AKR/J m 49.5 16.4   6 6.68 0.33 26.9, 75.4 0.9
BALB/cByJ f 14.5 10.7   5 4.79 0.741 4.4, 30.4 -0.93
BALB/cByJ m 15.2 29.0   6 11.9 1.92 -1.3
BTBR T+ Itpr3tf/J f 17.7 5.63   6 2.3 0.318 11.1, 25.4 -0.81
BTBR T+ Itpr3tf/J m 20.1 4.54   6 1.85 0.226 12.9, 24.3 -0.98
C3H/HeJ f 40.0 12.2   6 4.99 0.305 26.6, 57.3 0.0
C3H/HeJ m 35.5 18.4   6 7.52 0.519 13.8, 60.1 0.0
C57BL/6J f 20.6 15.4   12 4.44 0.745 6.1, 58.4 -0.71
C57BL/6J m 23.2 17.9   12 5.18 0.773 2.5, 60.0 -0.79
C57L/J f 41.3 11.4   6 4.67 0.277 25.2, 60.9 0.05
C57L/J m 36.5 7.68   6 3.13 0.21 24.4, 45.5 0.07
DBA/2J f 47.6 19.8   12 5.71 0.415 31.0, 92.7 0.28
DBA/2J m 42.9 13.6   12 3.93 0.317 7.6, 58.4 0.48
FVB/NJ f 76.6 26.9   5 12.0 0.351 46.5, 119.0 1.33
FVB/NJ m 59.2 20.7   5 9.24 0.349 25.8, 79.4 1.52
NOD/ShiLtJ f 54.3 16.3   6 6.65 0.3 30.4, 73.4 0.52
NOD/ShiLtJ m 46.2 9.54   6 3.89 0.206 33.3, 56.1 0.69
NZB/BlNJ f 20.9 18.3   6 7.46 0.873 5.1, 52.9 -0.7
NZB/BlNJ m 22.8 8.51   6 3.47 0.374 12.7, 32.2 -0.81
PERA/EiJ f 77.3 17.5   5 7.82 0.226 55.3, 96.8 1.36
PERA/EiJ m 50.0 21.0   6 8.56 0.419 24.9, 77.0 0.93
PL/J f 90.3 39.6   6 16.2 0.438 52.7, 165.0 1.83
PL/J m 55.6 19.1   5 8.54 0.343 25.0, 77.4 1.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 11.7333 6.9427 25.4452 -1.9785
129S1/SvImJ m 29.4167 6.9427 43.1285 15.7048
A/J f 0.4833 6.9427 14.1952 -13.2285
A/J m 10.3833 6.9427 24.0952 -3.3285
AKR/J f 46.8167 6.9427 60.5285 33.1048
AKR/J m 49.5167 6.9427 63.2285 35.8048
BALB/cByJ f 14.46 7.6054 29.4806 -0.5606
BALB/cByJ m 15.15 6.9427 28.8619 1.4381
BTBR T+ Itpr3tf/J f 17.7167 6.9427 31.4285 4.0048
BTBR T+ Itpr3tf/J m 20.05 6.9427 33.7619 6.3381
C3H/HeJ f 40.0167 6.9427 53.7285 26.3048
C3H/HeJ m 35.5167 6.9427 49.2285 21.8048
C57BL/6J f 20.6333 4.9093 30.3291 10.9376
C57BL/6J m 23.1833 4.9093 32.8791 13.4876
C57L/J f 41.2833 6.9427 54.9952 27.5715
C57L/J m 36.5333 6.9427 50.2452 22.8215
DBA/2J f 47.5917 4.9093 57.2874 37.8959
DBA/2J m 42.9167 4.9093 52.6124 33.2209
FVB/NJ f 76.64 7.6054 91.6606 61.6194
FVB/NJ m 59.24 7.6054 74.2606 44.2194
NOD/ShiLtJ f 54.3167 6.9427 68.0285 40.6048
NOD/ShiLtJ m 46.2333 6.9427 59.9452 32.5215
NZB/BlNJ f 20.9333 6.9427 34.6452 7.2215
NZB/BlNJ m 22.75 6.9427 36.4619 9.0381
PERA/EiJ f 77.32 7.6054 92.3406 62.2994
PERA/EiJ m 50.0333 6.9427 63.7452 36.3215
PL/J f 90.35 6.9427 104.0619 76.6381
PL/J m 55.58 7.6054 70.6006 40.5594


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 20.575 4.9093 30.2708 10.8792
A/J both 5.4333 4.9093 15.1291 -4.2624
AKR/J both 48.1667 4.9093 57.8624 38.4709
BALB/cByJ both 14.805 5.1489 24.974 4.636
BTBR T+ Itpr3tf/J both 18.8833 4.9093 28.5791 9.1876
C3H/HeJ both 37.7667 4.9093 47.4624 28.0709
C57BL/6J both 21.9083 3.4714 28.7643 15.0524
C57L/J both 38.9083 4.9093 48.6041 29.2126
DBA/2J both 45.2542 3.4714 52.1101 38.3982
FVB/NJ both 67.94 5.3778 78.5612 57.3188
NOD/ShiLtJ both 50.275 4.9093 59.9708 40.5792
NZB/BlNJ both 21.8417 4.9093 31.5374 12.1459
PERA/EiJ both 63.6767 5.1489 73.8457 53.5077
PL/J both 72.965 5.1489 83.134 62.796




  GWAS USING LINEAR MIXED MODELS