Project measure / variable:   Schughart3   status_day_survivalB

ID, description, units MPD:57192   status_day_survivalB   susceptibility to viral infection (0=resistant, 1=susceptible), mortality rate   [score]  2000 FFU group  
influenza A (H3N2) virus study
Data set, strains Schughart3   inbred w/CC8   8 strains     sex: both     age: 7-13wks
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  STRAIN COMPARISON PLOT
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Schughart3 - susceptibility to viral infection (0=resistant, 1=susceptible), mortality rate 2000 FFU group



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means0.750   score 0.761   score
Median of the strain means1.00   score 1.00   score
SD of the strain means± 0.463 ± 0.443
Coefficient of variation (CV)0.617 0.581
Min–max range of strain means0   –   1.00   score 0   –   1.00   score
Mean sample size per strain10.1   mice 10.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0056 0.0056 0.924 0.338
strain 7 29.4108 4.2015 693.2537 < 0.0001
sex:strain 7 0.036 0.0051 0.8484 0.5491
Residuals 150 0.9091 0.0061


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.0 0.0   10 0.0 0.0 1.0, 1.0 0.54
129S1/SvImJ m 1.0 0.0   10 0.0 0.0 1.0, 1.0 0.54
A/J f 1.0 0.0   12 0.0 0.0 1.0, 1.0 0.54
A/J m 1.0 0.0   11 0.0 0.0 1.0, 1.0 0.54
C57BL/6J f 1.0 0.0   11 0.0 0.0 1.0, 1.0 0.54
C57BL/6J m 1.0 0.0   10 0.0 0.0 1.0, 1.0 0.54
CAST/EiJ f 1.0 0.0   10 0.0 0.0 1.0, 1.0 0.54
CAST/EiJ m 1.0 0.0   13 0.0 0.0 1.0, 1.0 0.54
NOD/ShiLtJ f 1.0 0.0   10 0.0 0.0 1.0, 1.0 0.54
NOD/ShiLtJ m 1.0 0.0   9 0.0 0.0 1.0, 1.0 0.54
NZO/HlLtJ f 0.0 0.0   9 0.0 0.0 -1.62
NZO/HlLtJ m 0.0909 0.302   11 0.0909 3.32 -1.52
PWK/PhJ f 0.0 0.0   11 0.0 0.0 -1.62
PWK/PhJ m 0.0 0.0   10 0.0 0.0 -1.72
WSB/EiJ f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.54
WSB/EiJ m 1.0 0.0   11 0.0 0.0 1.0, 1.0 0.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.0 0.0246 1.0486 0.9514
129S1/SvImJ m 1.0 0.0246 1.0486 0.9514
A/J f 1.0 0.0225 1.0444 0.9556
A/J m 1.0 0.0235 1.0464 0.9536
C57BL/6J f 1.0 0.0235 1.0464 0.9536
C57BL/6J m 1.0 0.0246 1.0486 0.9514
CAST/EiJ f 1.0 0.0246 1.0486 0.9514
CAST/EiJ m 1.0 0.0216 1.0427 0.9573
NOD/ShiLtJ f 1.0 0.0246 1.0486 0.9514
NOD/ShiLtJ m 1.0 0.0259 1.0513 0.9487
NZO/HlLtJ f 0.0 0.0259 0.0513 -0.0513
NZO/HlLtJ m 0.0909 0.0235 0.1373 0.0445
PWK/PhJ f 0.0 0.0235 0.0464 -0.0464
PWK/PhJ m 0.0 0.0246 0.0486 -0.0486
WSB/EiJ f 1.0 0.0275 1.0544 0.9456
WSB/EiJ m 1.0 0.0235 1.0464 0.9536


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.0 0.0174 1.0344 0.9656
A/J both 1.0 0.0162 1.0321 0.9679
C57BL/6J both 1.0 0.017 1.0336 0.9664
CAST/EiJ both 1.0 0.0164 1.0324 0.9676
NOD/ShiLtJ both 1.0 0.0179 1.0353 0.9647
NZO/HlLtJ both 0.0455 0.0175 0.08 0.0109
PWK/PhJ both 0.0 0.017 0.0336 -0.0336
WSB/EiJ both 1.0 0.0181 1.0357 0.9643




  GWAS USING LINEAR MIXED MODELS