Project measure / variable:   GMC16   total_protein_17

ID, description, units MPD:56542   total_protein_17   total protein (plasma TP)   [g/L]  at age 16-17wks  
Data set, strains GMC16   inbred w/CC8   7 strains     sex: both     age: 16-17wks
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  STRAIN COMPARISON PLOT
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GMC16 - total protein (plasma TP) at age 16-17wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested6 strains7 strains
Mean of the strain means50.0   g/L 50.7   g/L
Median of the strain means49.3   g/L 52.1   g/L
SD of the strain means± 2.76 ± 3.26
Coefficient of variation (CV)0.0551 0.0644
Min–max range of strain means46.9   –   55.0   g/L 44.7   –   53.7   g/L
Mean sample size per strain3.5   mice 3.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 44.8855 44.8855 9.7868 0.004
strain 4 95.8265 23.9566 5.2235 0.0027
sex:strain 4 65.4781 16.3695 3.5692 0.0174
Residuals 29 133.0042 4.5864


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 49.5 1.12   4 0.558 0.0225 47.9, 50.4 -0.2
129S1/SvImJ m 53.7 0.222   4 0.111 0.00413 53.5, 54.0 0.92
A/J f 51.0 3.15   4 1.57 0.0618 47.6, 53.9 0.34
A/J m 51.1 1.3   4 0.65 0.0254 49.6, 52.4 0.13
C57BL/6J f 49.1 1.81   4 0.906 0.0369 48.0, 51.8 -0.34
C57BL/6J m 52.3 1.73   4 0.865 0.033 50.2, 53.8 0.49
NOD/ShiLtJ f 46.9 4.05   4 2.02 0.0863 41.2, 50.4 -1.14
NOD/ShiLtJ m 52.1 2.67   4 1.33 0.0512 50.1, 55.8 0.43
NZO/HlLtJ f 55.0 1.12   4 0.558 0.0203 53.8, 56.5 1.79
NZO/HlLtJ m 53.1 0.808   3 0.467 0.0152 52.4, 54.0 0.74
PWK/PhJ m 47.8 0.0   1   0.0 0.0 47.8, 47.8 -0.88
WSB/EiJ f 48.8 0.0   1   0.0 0.0 48.8, 48.8 -0.45
WSB/EiJ m 44.7 0.7   3 0.404 0.0157 43.9, 45.2 -1.83


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 49.45 1.0708 51.64 47.26
129S1/SvImJ m 53.675 1.0708 55.865 51.485
A/J f 50.975 1.0708 53.165 48.785
A/J m 51.075 1.0708 53.265 48.885
C57BL/6J f 49.1 1.0708 51.29 46.91
C57BL/6J m 52.35 1.0708 54.54 50.16
NOD/ShiLtJ f 46.875 1.0708 49.065 44.685
NOD/ShiLtJ m 52.075 1.0708 54.265 49.885
NZO/HlLtJ f 55.0 1.0708 57.19 52.81
NZO/HlLtJ m 53.1333 1.2364 55.6621 50.6045


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 51.5625 0.7572 53.1111 50.0139
A/J both 51.025 0.7572 52.5736 49.4764
C57BL/6J both 50.725 0.7572 52.2736 49.1764
NOD/ShiLtJ both 49.475 0.7572 51.0236 47.9264
NZO/HlLtJ both 54.0667 0.8178 55.7393 52.394




  GWAS USING LINEAR MIXED MODELS