Project measure / variable:   GMC09   speed_mean

ID, description, units MPD:55858   speed_mean   mean speed traveled, 21 h test, 15 min bins   [cm/s]  
Data set, strains GMC09   inbred w/CC8   8 strains     sex: both     age: 12-13wks
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  STRAIN COMPARISON PLOT
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GMC09 - mean speed traveled, 21 h test, 15 min bins



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means6.47   cm/s 5.41   cm/s
Median of the strain means6.87   cm/s 5.08   cm/s
SD of the strain means± 2.18 ± 2.39
Coefficient of variation (CV)0.336 0.441
Min–max range of strain means3.37   –   9.46   cm/s 2.43   –   9.74   cm/s
Mean sample size per strain17.5   mice 16.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 77.4175 77.4175 4.6998 0.0311
strain 7 1028.0103 146.8586 8.9154 < 0.0001
sex:strain 7 257.0046 36.7149 2.2289 0.0324
Residuals 255 4200.4611 16.4724


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.37 2.23   16 0.556 0.661 1.5, 10.2 -1.42
129S1/SvImJ m 2.43 1.44   16 0.361 0.594 0.8, 6.6 -1.25
A/J f 4.56 1.08   16 0.27 0.237 3.4, 8.0 -0.88
A/J m 4.11 1.47   16 0.368 0.358 2.6, 8.9 -0.55
C57BL/6J f 6.76 2.41   16 0.602 0.356 3.8, 11.7 0.13
C57BL/6J m 4.81 1.15   16 0.286 0.238 3.4, 7.8 -0.25
CAST/EiJ f 8.98 5.98   19 1.37 0.666 4.0, 29.6 1.15
CAST/EiJ m 6.67 1.74   14 0.466 0.261 4.8, 11.6 0.53
NOD/ShiLtJ f 9.46 5.68   18 1.34 0.6 4.3, 21.6 1.37
NOD/ShiLtJ m 5.36 1.24   16 0.309 0.231 2.9, 7.5 -0.02
NZO/HlLtJ f 4.51 3.78   17 0.918 0.839 1.2, 14.1 -0.9
NZO/HlLtJ m 3.04 2.48   17 0.601 0.815 1.3, 11.9 -0.99
PWK/PhJ f 6.97 3.5   20 0.783 0.502 3.6, 20.6 0.23
PWK/PhJ m 9.74 8.91   20 1.99 0.915 3.5, 37.5 1.81
WSB/EiJ f 7.15 2.75   18 0.647 0.384 3.9, 14.8 0.31
WSB/EiJ m 7.13 5.7   16 1.43 0.799 3.2, 26.1 0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.3687 1.0147 5.3669 1.3706
129S1/SvImJ m 2.4312 1.0147 4.4294 0.4331
A/J f 4.5562 1.0147 6.5544 2.5581
A/J m 4.1125 1.0147 6.1107 2.1143
C57BL/6J f 6.7625 1.0147 8.7607 4.7643
C57BL/6J m 4.8062 1.0147 6.8044 2.8081
CAST/EiJ f 8.9789 0.9311 10.8126 7.1453
CAST/EiJ m 6.6714 1.0847 8.8076 4.5353
NOD/ShiLtJ f 9.4611 0.9566 11.345 7.5772
NOD/ShiLtJ m 5.3625 1.0147 7.3607 3.3643
NZO/HlLtJ f 4.5118 0.9844 6.4503 2.5733
NZO/HlLtJ m 3.0412 0.9844 4.9797 1.1027
PWK/PhJ f 6.97 0.9075 8.7572 5.1828
PWK/PhJ m 9.74 0.9075 11.5272 7.9528
WSB/EiJ f 7.15 0.9566 9.0339 5.2661
WSB/EiJ m 7.1312 1.0147 9.1294 5.1331


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.9 0.7175 4.3129 1.4871
A/J both 4.3344 0.7175 5.7473 2.9215
C57BL/6J both 5.7844 0.7175 7.1973 4.3715
CAST/EiJ both 7.8252 0.7148 9.2328 6.4176
NOD/ShiLtJ both 7.4118 0.6973 8.7849 6.0387
NZO/HlLtJ both 3.7765 0.696 5.1472 2.4057
PWK/PhJ both 8.355 0.6417 9.6188 7.0912
WSB/EiJ both 7.1406 0.6973 8.5137 5.7675




  GWAS USING LINEAR MIXED MODELS