Project measure / variable:   GMC09   breaks_X_mean

ID, description, units MPD:55851   breaks_X_mean   mean total beam breaks on X-axis, 21 h test, 15 min bins   [n]  
Data set, strains GMC09   inbred w/CC8   8 strains     sex: both     age: 12-13wks
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  STRAIN COMPARISON PLOT
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GMC09 - mean total beam breaks on X-axis, 21 h test, 15 min bins



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means796   n 570   n
Median of the strain means687   n 587   n
SD of the strain means± 688 ± 313
Coefficient of variation (CV)0.864 0.549
Min–max range of strain means188   –   2324   n 152   –   1071   n
Mean sample size per strain17.5   mice 16.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4270378.3097 4270378.3097 3.9024 0.0493
strain 7 50854580.5576 7264940.0797 6.639 < 0.0001
sex:strain 7 18396765.6808 2628109.383 2.4017 0.0214
Residuals 255 279041813.2756 1094281.6207


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 188.0 89.6   16 22.4 0.476 67.0, 475.0 -0.88
129S1/SvImJ m 152.0 58.1   16 14.5 0.381 49.6, 228.0 -1.34
A/J f 364.0 55.7   16 13.9 0.153 239.0, 431.0 -0.63
A/J m 392.0 65.8   16 16.5 0.168 258.0, 503.0 -0.57
C57BL/6J f 755.0 149.0   16 37.3 0.198 524.0, 1077.0 -0.06
C57BL/6J m 618.0 191.0   16 47.7 0.309 368.0, 1095.0 0.15
CAST/EiJ f 1090.0 1449.0   19 332.0 1.33 403.0, 6936.0 0.43
CAST/EiJ m 782.0 236.0   14 63.0 0.301 481.0, 1274.0 0.68
NOD/ShiLtJ f 2324.0 2790.0   18 658.0 1.2 652.0, 8275.0 2.22
NOD/ShiLtJ m 784.0 228.0   16 57.0 0.291 521.0, 1401.0 0.68
NZO/HlLtJ f 250.0 87.1   17 21.1 0.349 99.8, 454.0 -0.79
NZO/HlLtJ m 204.0 29.9   17 7.24 0.146 165.0, 277.0 -1.17
PWK/PhJ f 619.0 145.0   20 32.3 0.234 387.0, 944.0 -0.26
PWK/PhJ m 556.0 133.0   20 29.7 0.239 356.0, 865.0 -0.04
WSB/EiJ f 777.0 502.0   18 118.0 0.645 355.0, 2119.0 -0.03
WSB/EiJ m 1071.0 2596.0   16 649.0 2.42 301.0, 10790.0 1.6


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 188.3875 261.5198 703.4012 -326.6262
129S1/SvImJ m 152.3563 261.5198 667.3699 -362.6574
A/J f 363.8313 261.5198 878.8449 -151.1824
A/J m 391.85 261.5198 906.8637 -123.1637
C57BL/6J f 754.5687 261.5198 1269.5824 239.5551
C57BL/6J m 618.0125 261.5198 1133.0262 102.9988
CAST/EiJ f 1089.6526 239.987 1562.2616 617.0437
CAST/EiJ m 782.2357 279.5764 1332.8085 231.6629
NOD/ShiLtJ f 2324.4389 246.5632 2809.9985 1838.8793
NOD/ShiLtJ m 783.7312 261.5198 1298.7449 268.7176
NZO/HlLtJ f 249.7882 253.7115 749.4249 -249.8484
NZO/HlLtJ m 204.2647 253.7115 703.9014 -295.372
PWK/PhJ f 618.82 233.9104 1079.4622 158.1778
PWK/PhJ m 556.46 233.9104 1017.1022 95.8178
WSB/EiJ f 777.0333 246.5632 1262.5929 291.4738
WSB/EiJ m 1070.8437 261.5198 1585.8574 555.8301


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 170.3719 184.9224 534.5415 -193.7978
A/J both 377.8406 184.9224 742.0103 13.671
C57BL/6J both 686.2906 184.9224 1050.4603 322.121
CAST/EiJ both 935.9442 184.2259 1298.7422 573.1461
NOD/ShiLtJ both 1554.0851 179.7123 1907.9944 1200.1758
NZO/HlLtJ both 227.0265 179.4011 580.3229 -126.27
PWK/PhJ both 587.64 165.3996 913.3633 261.9167
WSB/EiJ both 923.9385 179.7123 1277.8478 570.0292




  GWAS USING LINEAR MIXED MODELS