Project measure / variable:   GMC03   transfer_arousal

ID, description, units MPD:55216   transfer_arousal   transfer arousal (0=prolonged freeze, 1=brief freeze, 2=immediate movement)   [score]  
Data set, strains GMC03   inbred w/CC8   8 strains     sex: both     age: 8-10wks
Procedure observation (SHIRPA)
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  STRAIN COMPARISON PLOT
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GMC03 - transfer arousal (0=prolonged freeze, 1=brief freeze, 2=immediate movement)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means1.30   score 1.36   score
Median of the strain means1.42   score 1.36   score
SD of the strain means± 0.398 ± 0.409
Coefficient of variation (CV)0.306 0.301
Min–max range of strain means0.688   –   1.78   score 0.882   –   2.00   score
Mean sample size per strain17.5   mice 17.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0685 0.0685 0.3748 0.5409
strain 7 34.8457 4.978 27.2335 < 0.0001
sex:strain 7 3.2238 0.4605 2.5196 0.016
Residuals 260 47.525 0.1828


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.0 0.0   16 0.0 0.0 1.0, 1.0 -0.76
129S1/SvImJ m 1.0 0.0   16 0.0 0.0 1.0, 1.0 -0.87
A/J f 0.688 0.479   16 0.12 0.696 -1.54
A/J m 0.938 0.25   16 0.0625 0.267 -1.03
C57BL/6J f 1.5 0.516   16 0.129 0.344 1.0, 2.0 0.5
C57BL/6J m 1.81 0.403   16 0.101 0.222 1.0, 2.0 1.11
CAST/EiJ f 1.58 0.507   19 0.116 0.321 1.0, 2.0 0.7
CAST/EiJ m 1.41 0.507   17 0.123 0.359 1.0, 2.0 0.13
NOD/ShiLtJ f 1.33 0.485   18 0.114 0.364 1.0, 2.0 0.07
NOD/ShiLtJ m 1.5 0.516   16 0.129 0.344 1.0, 2.0 0.35
NZO/HlLtJ f 0.882 0.485   17 0.118 0.55 -1.05
NZO/HlLtJ m 0.882 0.485   17 0.118 0.55 -1.16
PWK/PhJ f 1.65 0.489   20 0.109 0.297 1.0, 2.0 0.88
PWK/PhJ m 1.32 0.477   22 0.102 0.362 1.0, 2.0 -0.09
WSB/EiJ f 1.78 0.428   18 0.101 0.241 1.0, 2.0 1.2
WSB/EiJ m 2.0 0.0   16 0.0 0.0 2.0, 2.0 1.57


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.0 0.1069 1.2105 0.7895
129S1/SvImJ m 1.0 0.1069 1.2105 0.7895
A/J f 0.6875 0.1069 0.898 0.477
A/J m 0.9375 0.1069 1.148 0.727
C57BL/6J f 1.5 0.1069 1.7105 1.2895
C57BL/6J m 1.8125 0.1069 2.023 1.602
CAST/EiJ f 1.5789 0.0981 1.7721 1.3858
CAST/EiJ m 1.4118 0.1037 1.6159 1.2076
NOD/ShiLtJ f 1.3333 0.1008 1.5318 1.1349
NOD/ShiLtJ m 1.5 0.1069 1.7105 1.2895
NZO/HlLtJ f 0.8824 0.1037 1.0865 0.6782
NZO/HlLtJ m 0.8824 0.1037 1.0865 0.6782
PWK/PhJ f 1.65 0.0956 1.8382 1.4618
PWK/PhJ m 1.3182 0.0912 1.4977 1.1387
WSB/EiJ f 1.7778 0.1008 1.9762 1.5793
WSB/EiJ m 2.0 0.1069 2.2105 1.7895


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.0 0.0756 1.1488 0.8512
A/J both 0.8125 0.0756 0.9613 0.6637
C57BL/6J both 1.6563 0.0756 1.8051 1.5074
CAST/EiJ both 1.4954 0.0714 1.6359 1.3548
NOD/ShiLtJ both 1.4167 0.0734 1.5613 1.272
NZO/HlLtJ both 0.8824 0.0733 1.0267 0.738
PWK/PhJ both 1.4841 0.066 1.6141 1.354
WSB/EiJ both 1.8889 0.0734 2.0335 1.7443




  GWAS USING LINEAR MIXED MODELS