Project measure / variable:   GMC01   periphery_permanence

ID, description, units MPD:55073   periphery_permanence   permanence time in periphery, 20 min test   [s]  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - permanence time in periphery, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means1060   s 1072   s
Median of the strain means1048   s 1058   s
SD of the strain means± 118 ± 98.9
Coefficient of variation (CV)0.111 0.0923
Min–max range of strain means834   –   1199   s 920   –   1198   s
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 14738.2754 14738.2754 5.6912 0.0178
strain 7 2696228.357 385175.4796 148.7351 < 0.0001
sex:strain 7 67806.7419 9686.6774 3.7405 0.0007
Residuals 259 670725.6553 2589.6743


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1175.0 34.2   16 8.55 0.0291 1086.0, 1200.0 0.97
129S1/SvImJ m 1192.0 9.79   15 2.53 0.00821 1169.0, 1200.0 1.21
A/J f 1199.0 3.07   16 0.768 0.00256 1188.0, 1200.0 1.18
A/J m 1198.0 5.32   16 1.33 0.00444 1184.0, 1200.0 1.27
C57BL/6J f 1005.0 57.3   16 14.3 0.057 888.0, 1078.0 -0.47
C57BL/6J m 991.0 43.0   16 10.7 0.0434 864.0, 1050.0 -0.82
CAST/EiJ f 1037.0 35.1   19 8.05 0.0339 972.0, 1116.0 -0.2
CAST/EiJ m 1018.0 55.0   18 13.0 0.054 923.0, 1119.0 -0.55
NOD/ShiLtJ f 834.0 97.7   18 23.0 0.117 632.0, 973.0 -1.92
NOD/ShiLtJ m 920.0 48.2   16 12.1 0.0524 844.0, 1002.0 -1.54
NZO/HlLtJ f 1153.0 66.0   17 16.0 0.0573 957.0, 1200.0 0.79
NZO/HlLtJ m 1141.0 55.8   17 13.5 0.0489 992.0, 1199.0 0.7
PWK/PhJ f 1058.0 36.6   20 8.18 0.0346 986.0, 1112.0 -0.02
PWK/PhJ m 1073.0 32.7   22 6.96 0.0304 1028.0, 1125.0 0.01
WSB/EiJ f 1021.0 40.1   18 9.45 0.0393 923.0, 1109.0 -0.33
WSB/EiJ m 1043.0 88.2   15 22.8 0.0845 853.0, 1131.0 -0.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1174.6625 12.7222 1199.7146 1149.6104
129S1/SvImJ m 1191.8533 13.1394 1217.7271 1165.9796
A/J f 1198.7562 12.7222 1223.8084 1173.7041
A/J m 1197.9188 12.7222 1222.9709 1172.8666
C57BL/6J f 1004.8562 12.7222 1029.9084 979.8041
C57BL/6J m 990.5938 12.7222 1015.6459 965.5416
CAST/EiJ f 1036.7526 11.6747 1059.7421 1013.7632
CAST/EiJ m 1018.1833 11.9946 1041.8027 994.5639
NOD/ShiLtJ f 833.6 11.9946 857.2194 809.9806
NOD/ShiLtJ m 919.6562 12.7222 944.7084 894.6041
NZO/HlLtJ f 1152.7471 12.3424 1177.0512 1128.4429
NZO/HlLtJ m 1141.2 12.3424 1165.5041 1116.8959
PWK/PhJ f 1058.475 11.3791 1080.8823 1036.0677
PWK/PhJ m 1073.0364 10.8495 1094.4009 1051.6718
WSB/EiJ f 1021.0056 11.9946 1044.6249 997.3862
WSB/EiJ m 1043.44 13.1394 1069.3137 1017.5663


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1183.2579 9.1447 1201.2653 1165.2506
A/J both 1198.3375 8.996 1216.052 1180.623
C57BL/6J both 997.725 8.996 1015.4395 980.0105
CAST/EiJ both 1027.468 8.3691 1043.9482 1010.9878
NOD/ShiLtJ both 876.6281 8.7425 893.8436 859.4127
NZO/HlLtJ both 1146.9735 8.7274 1164.1592 1129.7879
PWK/PhJ both 1065.7557 7.8612 1081.2358 1050.2756
WSB/EiJ both 1032.2228 8.8954 1049.7394 1014.7062




  GWAS USING LINEAR MIXED MODELS