Project measure / variable:   GMC01   center_time_4

ID, description, units MPD:55064   center_time_4   center time, successive 5 min intervals   [%]  4th 5min  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - center time, successive 5 min intervals 4th 5min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means13.0   % 11.8   %
Median of the strain means14.5   % 11.4   %
SD of the strain means± 11.0 ± 10.1
Coefficient of variation (CV)0.848 0.859
Min–max range of strain means0.319   –   33.1   % 0.0437   –   27.8   %
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 142.9373 142.9373 3.367 0.0677
strain 7 25556.5438 3650.9348 86.0007 < 0.0001
sex:strain 7 469.8571 67.1224 1.5811 0.1412
Residuals 259 10995.1724 42.4524


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.98 5.86   16 1.46 1.97 -0.91
129S1/SvImJ m 0.72 0.989   15 0.255 1.37 -1.09
A/J f 0.319 1.02   16 0.255 3.2 -1.15
A/J m 0.0437 0.15   16 0.0376 3.44 -1.16
C57BL/6J f 19.7 8.54   16 2.13 0.432 7.3, 40.7 0.61
C57BL/6J m 21.5 7.05   16 1.76 0.328 12.3, 40.1 0.96
CAST/EiJ f 16.2 5.47   19 1.26 0.337 6.6, 27.5 0.29
CAST/EiJ m 17.8 9.14   18 2.16 0.514 2.9, 34.2 0.6
NOD/ShiLtJ f 33.1 12.3   18 2.91 0.373 19.1, 74.1 1.83
NOD/ShiLtJ m 27.8 6.8   16 1.7 0.244 13.1, 38.6 1.59
NZO/HlLtJ f 2.25 3.86   17 0.936 1.71 -0.97
NZO/HlLtJ m 3.58 4.15   17 1.01 1.16 -0.81
PWK/PhJ f 12.8 4.6   20 1.03 0.36 2.9, 26.2 -0.02
PWK/PhJ m 11.3 4.72   22 1.01 0.419 4.0, 21.3 -0.05
WSB/EiJ f 16.4 8.58   18 2.02 0.522 2.5, 40.6 0.31
WSB/EiJ m 11.4 7.22   15 1.86 0.633 1.5, 26.2 -0.04


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.975 1.6289 6.1825 -0.2325
129S1/SvImJ m 0.72 1.6823 4.0327 -2.5927
A/J f 0.3188 1.6289 3.5263 -2.8888
A/J m 0.0438 1.6289 3.2513 -3.1638
C57BL/6J f 19.7375 1.6289 22.945 16.53
C57BL/6J m 21.4875 1.6289 24.695 18.28
CAST/EiJ f 16.2316 1.4948 19.175 13.2881
CAST/EiJ m 17.7944 1.5357 20.8186 14.7703
NOD/ShiLtJ f 33.1111 1.5357 36.1352 30.087
NOD/ShiLtJ m 27.8438 1.6289 31.0513 24.6362
NZO/HlLtJ f 2.2529 1.5803 5.3647 -0.8588
NZO/HlLtJ m 3.5765 1.5803 6.6883 0.4647
PWK/PhJ f 12.77 1.4569 15.6389 9.9011
PWK/PhJ m 11.2727 1.3891 14.0081 8.5373
WSB/EiJ f 16.4278 1.5357 19.4519 13.4037
WSB/EiJ m 11.4133 1.6823 14.7261 8.1006


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.8475 1.1708 4.1531 -0.4581
A/J both 0.1813 1.1518 2.4493 -2.0868
C57BL/6J both 20.6125 1.1518 22.8806 18.3444
CAST/EiJ both 17.013 1.0715 19.1231 14.903
NOD/ShiLtJ both 30.4774 1.1193 32.6816 28.2733
NZO/HlLtJ both 2.9147 1.1174 5.1151 0.7143
PWK/PhJ both 12.0214 1.0065 14.0034 10.0394
WSB/EiJ both 13.9206 1.1389 16.1633 11.6778




  GWAS USING LINEAR MIXED MODELS