Project measure / variable:   GMC01   center_time_2

ID, description, units MPD:55062   center_time_2   center time, successive 5 min intervals   [%]  2nd 5min  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - center time, successive 5 min intervals 2nd 5min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means12.0   % 10.9   %
Median of the strain means14.5   % 12.2   %
SD of the strain means± 8.99 ± 7.77
Coefficient of variation (CV)0.752 0.710
Min–max range of strain means0.0375   –   27.4   % 0.131   –   21.6   %
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 106.2937 106.2937 3.4997 0.0625
strain 7 16009.1277 2287.0182 75.2992 < 0.0001
sex:strain 7 388.3471 55.4782 1.8266 0.0825
Residuals 259 7866.4543 30.3724


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.25 4.19   16 1.05 1.86 -1.08
129S1/SvImJ m 0.727 1.2   15 0.311 1.66 -1.31
A/J f 0.0375 0.15   16 0.0375 4.0 -1.33
A/J m 0.131 0.525   16 0.131 4.0 -1.39
C57BL/6J f 15.9 4.75   16 1.19 0.298 9.6, 24.5 0.44
C57BL/6J m 15.8 4.49   16 1.12 0.284 9.4, 25.2 0.63
CAST/EiJ f 15.9 4.98   19 1.14 0.314 8.3, 25.1 0.44
CAST/EiJ m 17.6 6.22   18 1.47 0.354 8.6, 32.9 0.86
NOD/ShiLtJ f 27.4 8.16   18 1.92 0.297 15.7, 43.4 1.72
NOD/ShiLtJ m 21.6 5.46   16 1.37 0.254 13.7, 31.7 1.37
NZO/HlLtJ f 5.22 10.4   17 2.53 2.0 -0.75
NZO/HlLtJ m 7.15 6.82   17 1.65 0.954 -0.49
PWK/PhJ f 13.6 5.24   20 1.17 0.386 5.1, 25.0 0.18
PWK/PhJ m 11.3 3.68   22 0.785 0.326 3.5, 19.1 0.05
WSB/EiJ f 15.4 4.39   18 1.03 0.285 5.8, 22.3 0.38
WSB/EiJ m 13.2 6.75   15 1.74 0.51 2.5, 24.4 0.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.25 1.3778 4.9631 -0.4631
129S1/SvImJ m 0.7267 1.423 3.5287 -2.0754
A/J f 0.0375 1.3778 2.7506 -2.6756
A/J m 0.1313 1.3778 2.8443 -2.5818
C57BL/6J f 15.9188 1.3778 18.6318 13.2057
C57BL/6J m 15.8 1.3778 18.5131 13.0869
CAST/EiJ f 15.8947 1.2643 18.3844 13.405
CAST/EiJ m 17.5778 1.299 20.1357 15.0199
NOD/ShiLtJ f 27.45 1.299 30.0079 24.8921
NOD/ShiLtJ m 21.5563 1.3778 24.2693 18.8432
NZO/HlLtJ f 5.2235 1.3366 7.8556 2.5915
NZO/HlLtJ m 7.1471 1.3366 9.7791 4.515
PWK/PhJ f 13.58 1.2323 16.0066 11.1534
PWK/PhJ m 11.3 1.175 13.6137 8.9863
WSB/EiJ f 15.4056 1.299 17.9635 12.8476
WSB/EiJ m 13.2267 1.423 16.0287 10.4246


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.4883 0.9903 3.4385 -0.4618
A/J both 0.0844 0.9742 2.0028 -1.8341
C57BL/6J both 15.8594 0.9742 17.7778 13.9409
CAST/EiJ both 16.7363 0.9064 18.521 14.9515
NOD/ShiLtJ both 24.5031 0.9468 26.3675 22.6387
NZO/HlLtJ both 6.1853 0.9451 8.0464 4.3241
PWK/PhJ both 12.44 0.8513 14.1164 10.7636
WSB/EiJ both 14.3161 0.9634 16.2131 12.4191




  GWAS USING LINEAR MIXED MODELS