Project measure / variable:   GMC01   center_time_1

ID, description, units MPD:55061   center_time_1   center time, successive 5 min intervals   [%]  1st 5min  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - center time, successive 5 min intervals 1st 5min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means9.63   % 7.60   %
Median of the strain means8.70   % 8.50   %
SD of the strain means± 8.68 ± 5.90
Coefficient of variation (CV)0.901 0.777
Min–max range of strain means0.0125   –   27.0   % 0.438   –   17.2   %
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 337.8764 337.8764 18.1064 < 0.0001
strain 7 12306.269 1758.0384 94.2113 < 0.0001
sex:strain 7 656.8586 93.8369 5.0286 < 0.0001
Residuals 259 4833.0947 18.6606


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.71 2.18   16 0.545 1.28 -0.91
129S1/SvImJ m 0.533 0.826   15 0.213 1.55 -1.2
A/J f 0.0125 0.0342   16 0.00854 2.73 -1.11
A/J m 0.438 1.21   16 0.304 2.78 -1.21
C57BL/6J f 13.7 4.42   16 1.1 0.321 7.9, 23.6 0.47
C57BL/6J m 10.9 5.3   16 1.32 0.485 1.5, 23.2 0.56
CAST/EiJ f 8.29 2.04   19 0.469 0.247 3.6, 13.3 -0.15
CAST/EiJ m 8.59 3.66   18 0.863 0.426 3.4, 16.2 0.17
NOD/ShiLtJ f 27.0 7.84   18 1.85 0.29 13.2, 41.4 2.0
NOD/ShiLtJ m 17.2 4.29   16 1.07 0.25 9.8, 26.0 1.63
NZO/HlLtJ f 3.62 5.64   17 1.37 1.56 -0.69
NZO/HlLtJ m 3.01 3.76   17 0.913 1.25 -0.78
PWK/PhJ f 9.11 3.59   20 0.803 0.394 2.8, 14.2 -0.06
PWK/PhJ m 8.42 5.13   22 1.09 0.609 3.9, 26.7 0.14
WSB/EiJ f 13.6 4.6   18 1.08 0.337 7.2, 24.0 0.46
WSB/EiJ m 11.7 5.99   15 1.55 0.512 4.2, 25.9 0.69


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.7062 1.0799 3.8328 -0.4203
129S1/SvImJ m 0.5333 1.1154 2.7297 -1.663
A/J f 0.0125 1.0799 2.1391 -2.1141
A/J m 0.4375 1.0799 2.5641 -1.6891
C57BL/6J f 13.7375 1.0799 15.8641 11.6109
C57BL/6J m 10.9125 1.0799 13.0391 8.7859
CAST/EiJ f 8.2895 0.991 10.241 6.338
CAST/EiJ m 8.5889 1.0182 10.5939 6.5839
NOD/ShiLtJ f 26.9778 1.0182 28.9828 24.9728
NOD/ShiLtJ m 17.175 1.0799 19.3016 15.0484
NZO/HlLtJ f 3.6176 1.0477 5.6807 1.5545
NZO/HlLtJ m 3.0118 1.0477 5.0749 0.9487
PWK/PhJ f 9.11 0.9659 11.0121 7.2079
PWK/PhJ m 8.4182 0.921 10.2317 6.6046
WSB/EiJ f 13.6389 1.0182 15.6439 11.6339
WSB/EiJ m 11.7067 1.1154 13.903 9.5103


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.1198 0.7763 2.6484 -0.4088
A/J both 0.225 0.7636 1.7287 -1.2787
C57BL/6J both 12.325 0.7636 13.8287 10.8213
CAST/EiJ both 8.4392 0.7104 9.8381 7.0402
NOD/ShiLtJ both 22.0764 0.7421 23.5378 20.615
NZO/HlLtJ both 3.3147 0.7408 4.7735 1.8559
PWK/PhJ both 8.7641 0.6673 10.0781 7.45
WSB/EiJ both 12.6728 0.7551 14.1597 11.1858




  GWAS USING LINEAR MIXED MODELS