Project measure / variable:   GMC01   center_distance_4

ID, description, units MPD:55054   center_distance_4   center distance, successive 5 min intervals   [%]  4th 5min  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - center distance, successive 5 min intervals 4th 5min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means19.3   % 17.0   %
Median of the strain means23.1   % 19.7   %
SD of the strain means± 14.3 ± 12.8
Coefficient of variation (CV)0.740 0.754
Min–max range of strain means0.425   –   40.1   % 0.119   –   33.0   %
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 464.2466 464.2466 10.465 0.0014
strain 7 42264.6448 6037.8064 136.1031 < 0.0001
sex:strain 7 508.0908 72.5844 1.6362 0.1255
Residuals 259 11489.7572 44.362


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.37 8.77   16 2.19 1.63 -0.98
129S1/SvImJ m 1.76 2.67   15 0.688 1.51 -1.19
A/J f 0.425 1.39   16 0.348 3.27 -1.32
A/J m 0.119 0.325   16 0.0813 2.74 -1.32
C57BL/6J f 28.3 7.88   16 1.97 0.279 16.8, 41.6 0.63
C57BL/6J m 29.0 6.19   16 1.55 0.214 17.8, 39.7 0.93
CAST/EiJ f 28.9 6.16   19 1.41 0.213 16.5, 40.0 0.67
CAST/EiJ m 26.8 9.66   18 2.28 0.36 9.1, 42.7 0.76
NOD/ShiLtJ f 40.1 7.8   18 1.84 0.194 21.5, 54.9 1.46
NOD/ShiLtJ m 33.0 5.11   16 1.28 0.155 22.1, 40.6 1.24
NZO/HlLtJ f 4.94 7.81   17 1.89 1.58 -1.01
NZO/HlLtJ m 6.17 6.76   17 1.64 1.1 -0.85
PWK/PhJ f 19.0 5.06   20 1.13 0.267 11.0, 31.3 -0.02
PWK/PhJ m 17.5 5.45   22 1.16 0.311 9.5, 29.5 0.04
WSB/EiJ f 27.3 7.92   18 1.87 0.291 6.3, 38.7 0.56
WSB/EiJ m 21.9 8.94   15 2.31 0.409 4.8, 36.2 0.38


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.3687 1.6651 8.6476 2.0899
129S1/SvImJ m 1.76 1.7197 5.1464 -1.6264
A/J f 0.425 1.6651 3.7039 -2.8539
A/J m 0.1187 1.6651 3.3976 -3.1601
C57BL/6J f 28.2938 1.6651 31.5726 25.0149
C57BL/6J m 28.9625 1.6651 32.2414 25.6836
CAST/EiJ f 28.8842 1.528 31.8931 25.8753
CAST/EiJ m 26.8278 1.5699 29.9192 23.7364
NOD/ShiLtJ f 40.1278 1.5699 43.2192 37.0364
NOD/ShiLtJ m 32.975 1.6651 36.2539 29.6961
NZO/HlLtJ f 4.9353 1.6154 8.1163 1.7543
NZO/HlLtJ m 6.1706 1.6154 9.3516 2.9896
PWK/PhJ f 18.955 1.4893 21.8877 16.0223
PWK/PhJ m 17.5182 1.42 20.3144 14.7219
WSB/EiJ f 27.2556 1.5699 30.3469 24.1642
WSB/EiJ m 21.8533 1.7197 25.2398 18.4669


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.5644 1.1969 5.9212 1.2075
A/J both 0.2719 1.1774 2.5904 -2.0467
C57BL/6J both 28.6281 1.1774 30.9467 26.3096
CAST/EiJ both 27.856 1.0954 30.013 25.699
NOD/ShiLtJ both 36.5514 1.1442 38.8046 34.2982
NZO/HlLtJ both 5.5529 1.1423 7.8022 3.3036
PWK/PhJ both 18.2366 1.0289 20.2627 16.2105
WSB/EiJ both 24.5544 1.1643 26.8471 22.2618




  GWAS USING LINEAR MIXED MODELS