Project measure / variable:   GMC01   center_distance_3

ID, description, units MPD:55053   center_distance_3   center distance, successive 5 min intervals   [%]  3rd 5min  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - center distance, successive 5 min intervals 3rd 5min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means18.8   % 18.0   %
Median of the strain means21.3   % 21.8   %
SD of the strain means± 14.2 ± 13.0
Coefficient of variation (CV)0.756 0.724
Min–max range of strain means0.431   –   41.6   % 0.200   –   33.1   %
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 94.4214 94.4214 1.8253 0.1779
strain 7 42499.2582 6071.3226 117.3673 < 0.0001
sex:strain 7 642.9184 91.8455 1.7755 0.0925
Residuals 259 13397.8781 51.7293


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.28 4.58   16 1.14 1.4 -1.09
129S1/SvImJ m 1.91 3.06   15 0.79 1.6 -1.23
A/J f 0.431 1.73   16 0.431 4.0 -1.29
A/J m 0.2 0.678   16 0.17 3.39 -1.37
C57BL/6J f 25.7 8.9   16 2.23 0.347 11.4, 40.2 0.49
C57BL/6J m 28.1 6.34   16 1.58 0.226 18.2, 39.1 0.78
CAST/EiJ f 28.8 6.37   19 1.46 0.221 18.3, 39.8 0.7
CAST/EiJ m 29.0 6.65   18 1.57 0.229 19.2, 46.1 0.84
NOD/ShiLtJ f 41.6 9.0   18 2.12 0.216 28.6, 58.9 1.61
NOD/ShiLtJ m 33.1 9.47   16 2.37 0.286 16.2, 52.5 1.16
NZO/HlLtJ f 7.87 8.77   17 2.13 1.11 -0.77
NZO/HlLtJ m 8.13 9.96   17 2.42 1.23 -0.76
PWK/PhJ f 17.1 4.8   20 1.07 0.281 8.9, 25.4 -0.12
PWK/PhJ m 17.5 5.78   22 1.23 0.33 7.0, 26.8 -0.04
WSB/EiJ f 25.5 6.6   18 1.56 0.259 14.6, 40.0 0.47
WSB/EiJ m 26.0 12.6   15 3.24 0.484 8.5, 56.8 0.61


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.275 1.7981 6.8157 -0.2657
129S1/SvImJ m 1.9133 1.857 5.5702 -1.7435
A/J f 0.4312 1.7981 3.972 -3.1095
A/J m 0.2 1.7981 3.7407 -3.3407
C57BL/6J f 25.6813 1.7981 29.222 22.1405
C57BL/6J m 28.0938 1.7981 31.6345 24.553
CAST/EiJ f 28.8053 1.65 32.0544 25.5561
CAST/EiJ m 29.0111 1.6952 32.3493 25.6729
NOD/ShiLtJ f 41.6056 1.6952 44.9438 38.2673
NOD/ShiLtJ m 33.0688 1.7981 36.6095 29.528
NZO/HlLtJ f 7.8706 1.7444 11.3056 4.4356
NZO/HlLtJ m 8.1294 1.7444 11.5644 4.6944
PWK/PhJ f 17.105 1.6082 20.2719 13.9381
PWK/PhJ m 17.5409 1.5334 20.5604 14.5214
WSB/EiJ f 25.4833 1.6952 28.8215 22.1451
WSB/EiJ m 25.9667 1.857 29.6235 22.3098


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.5942 1.2924 5.1392 0.0491
A/J both 0.3156 1.2714 2.8193 -2.188
C57BL/6J both 26.8875 1.2714 29.3912 24.3838
CAST/EiJ both 28.9082 1.1828 31.2374 26.579
NOD/ShiLtJ both 37.3372 1.2356 39.7703 34.904
NZO/HlLtJ both 8.0 1.2335 10.4289 5.5711
PWK/PhJ both 17.323 1.1111 19.5108 15.1351
WSB/EiJ both 25.725 1.2572 28.2007 23.2493




  GWAS USING LINEAR MIXED MODELS