Project measure / variable:   GMC01   center_distance_2

ID, description, units MPD:55052   center_distance_2   center distance, successive 5 min intervals   [%]  2nd 5min  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - center distance, successive 5 min intervals 2nd 5min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means18.3   % 16.8   %
Median of the strain means21.3   % 19.7   %
SD of the strain means± 13.0 ± 11.4
Coefficient of variation (CV)0.709 0.679
Min–max range of strain means0.0938   –   36.2   % 0.113   –   29.3   %
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 216.1855 216.1855 6.1838 0.0135
strain 7 34160.7759 4880.1108 139.5907 < 0.0001
sex:strain 7 476.7369 68.1053 1.9481 0.0626
Residuals 259 9054.6794 34.9602


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 4.69 6.15   16 1.54 1.31 -1.05
129S1/SvImJ m 2.24 3.36   15 0.866 1.5 -1.28
A/J f 0.0938 0.375   16 0.0938 4.0 -1.4
A/J m 0.113 0.45   16 0.113 4.0 -1.46
C57BL/6J f 24.6 4.52   16 1.13 0.183 16.3, 31.5 0.49
C57BL/6J m 22.6 5.89   16 1.47 0.261 13.4, 36.2 0.51
CAST/EiJ f 28.9 4.67   19 1.07 0.161 20.8, 37.2 0.82
CAST/EiJ m 28.5 6.7   18 1.58 0.235 15.7, 39.4 1.02
NOD/ShiLtJ f 36.2 6.47   18 1.52 0.179 24.4, 48.5 1.39
NOD/ShiLtJ m 29.3 6.42   16 1.6 0.219 17.6, 38.3 1.09
NZO/HlLtJ f 7.3 9.82   17 2.38 1.34 -0.85
NZO/HlLtJ m 10.6 8.54   17 2.07 0.808 -0.54
PWK/PhJ f 18.0 4.78   20 1.07 0.265 9.9, 29.2 -0.02
PWK/PhJ m 16.8 3.66   22 0.78 0.217 8.0, 23.3 0.0
WSB/EiJ f 26.3 6.04   18 1.42 0.23 15.8, 36.6 0.62
WSB/EiJ m 24.3 8.33   15 2.15 0.342 7.9, 37.7 0.66


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 4.6937 1.4782 7.6045 1.783
129S1/SvImJ m 2.24 1.5267 5.2462 -0.7662
A/J f 0.0938 1.4782 3.0045 -2.817
A/J m 0.1125 1.4782 3.0233 -2.7983
C57BL/6J f 24.6313 1.4782 27.542 21.7205
C57BL/6J m 22.5938 1.4782 25.5045 19.683
CAST/EiJ f 28.9263 1.3565 31.5974 26.2552
CAST/EiJ m 28.5333 1.3936 31.2776 25.789
NOD/ShiLtJ f 36.1667 1.3936 38.911 33.4224
NOD/ShiLtJ m 29.3313 1.4782 32.242 26.4205
NZO/HlLtJ f 7.3 1.434 10.1239 4.4761
NZO/HlLtJ m 10.5765 1.434 13.4003 7.7526
PWK/PhJ f 17.99 1.3221 20.5935 15.3865
PWK/PhJ m 16.8455 1.2606 19.3278 14.3631
WSB/EiJ f 26.2833 1.3936 29.0276 23.539
WSB/EiJ m 24.32 1.5267 27.3262 21.3138


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.4669 1.0625 5.5591 1.3746
A/J both 0.1031 1.0452 2.1614 -1.9551
C57BL/6J both 23.6125 1.0452 25.6707 21.5543
CAST/EiJ both 28.7298 0.9724 30.6446 26.815
NOD/ShiLtJ both 32.749 1.0158 34.7492 30.7487
NZO/HlLtJ both 8.9382 1.014 10.935 6.9415
PWK/PhJ both 17.4177 0.9134 19.2163 15.6191
WSB/EiJ both 25.3017 1.0336 27.3369 23.2664




  GWAS USING LINEAR MIXED MODELS