Project measure / variable:   GMC01   center_entries

ID, description, units MPD:55046   center_entries   number of entries in center of arena, 20 min test   [n]  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - number of entries in center of arena, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means178   n 154   n
Median of the strain means122   n 119   n
SD of the strain means± 195 ± 159
Coefficient of variation (CV)1.10 1.03
Min–max range of strain means0.938   –   579   n 1.62   –   456   n
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 60746.8225 60746.8225 15.5342 0.0001
strain 7 7373149.789 1053307.1127 269.3521 < 0.0001
sex:strain 7 114885.1137 16412.1591 4.1969 0.0002
Residuals 259 1012825.002 3910.5212


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 24.2 27.4   16 6.85 1.13 -0.79
129S1/SvImJ m 10.5 11.6   15 3.0 1.11 -0.9
A/J f 0.938 1.73   16 0.433 1.85 -0.91
A/J m 1.62 4.96   16 1.24 3.06 -0.96
C57BL/6J f 293.0 74.2   16 18.6 0.253 169.0, 400.0 0.59
C57BL/6J m 292.0 68.9   16 17.2 0.236 219.0, 467.0 0.87
CAST/EiJ f 150.0 36.3   19 8.32 0.242 84.0, 218.0 -0.14
CAST/EiJ m 148.0 50.8   18 12.0 0.342 86.0, 256.0 -0.04
NOD/ShiLtJ f 579.0 152.0   18 35.9 0.263 370.0, 888.0 2.06
NOD/ShiLtJ m 456.0 93.5   16 23.4 0.205 237.0, 597.0 1.9
NZO/HlLtJ f 25.5 31.9   17 7.73 1.25 -0.78
NZO/HlLtJ m 28.6 28.8   17 6.98 1.0 1.0, 118.0 -0.79
PWK/PhJ f 93.8 21.3   20 4.77 0.227 47.0, 128.0 -0.43
PWK/PhJ m 90.5 29.1   22 6.21 0.322 53.0, 146.0 -0.4
WSB/EiJ f 256.0 83.8   18 19.7 0.328 112.0, 412.0 0.4
WSB/EiJ m 203.0 74.6   15 19.3 0.368 108.0, 368.0 0.31


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 24.1875 15.6335 54.9725 -6.5975
129S1/SvImJ m 10.4667 16.1463 42.2613 -21.328
A/J f 0.9375 15.6335 31.7225 -29.8475
A/J m 1.625 15.6335 32.41 -29.16
C57BL/6J f 293.0 15.6335 323.785 262.215
C57BL/6J m 292.0 15.6335 322.785 261.215
CAST/EiJ f 149.5789 14.3463 177.8292 121.3287
CAST/EiJ m 148.4444 14.7394 177.4688 119.42
NOD/ShiLtJ f 579.1667 14.7394 608.1911 550.1423
NOD/ShiLtJ m 456.375 15.6335 487.16 425.59
NZO/HlLtJ f 25.4706 15.1668 55.3365 -4.3953
NZO/HlLtJ m 28.6471 15.1668 58.5129 -1.2188
PWK/PhJ f 93.8 13.9831 121.335 66.265
PWK/PhJ m 90.5 13.3323 116.7536 64.2464
WSB/EiJ f 255.6667 14.7394 284.6911 226.6423
WSB/EiJ m 203.0 16.1463 234.7946 171.2054


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 17.3271 11.2373 39.4552 -4.8011
A/J both 1.2813 11.0546 23.0496 -20.4871
C57BL/6J both 292.5 11.0546 314.2683 270.7317
CAST/EiJ both 149.0117 10.2843 169.2632 128.7602
NOD/ShiLtJ both 517.7708 10.7431 538.9258 496.6158
NZO/HlLtJ both 27.0588 10.7245 48.1772 5.9405
PWK/PhJ both 92.15 9.6602 111.1725 73.1275
WSB/EiJ both 229.3333 10.9311 250.8584 207.8083




  GWAS USING LINEAR MIXED MODELS