Project measure / variable:   GMC01   center_rest

ID, description, units MPD:55042   center_rest   resting time in center of arena, 20 min test   [s]  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - resting time in center of arena, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means6.60   s 6.22   s
Median of the strain means6.33   s 4.87   s
SD of the strain means± 4.66 ± 5.45
Coefficient of variation (CV)0.706 0.877
Min–max range of strain means0   –   11.7   s 0   –   14.1   s
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.8585 1.8585 0.0386 0.8444
strain 7 5977.42 853.9171 17.7328 < 0.0001
sex:strain 7 229.8325 32.8332 0.6818 0.6874
Residuals 259 12472.0888 48.1548


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.562 1.42   16 0.356 2.53 -1.3
129S1/SvImJ m 0.0533 0.207   15 0.0533 3.87 -1.13
A/J f 0.0 0.0   16 0.0 0.0 -1.42
A/J m 0.0 0.0   16 0.0 0.0 -1.14
C57BL/6J f 11.7 8.99   16 2.25 0.766 1.4, 34.6 1.1
C57BL/6J m 12.2 5.04   16 1.26 0.412 5.5, 23.3 1.1
CAST/EiJ f 5.7 5.66   19 1.3 0.992 -0.19
CAST/EiJ m 6.27 7.37   18 1.74 1.18 0.01
NOD/ShiLtJ f 11.3 10.7   18 2.51 0.946 1.01
NOD/ShiLtJ m 10.4 8.47   16 2.12 0.815 1.3, 30.4 0.77
NZO/HlLtJ f 5.35 9.38   17 2.28 1.75 -0.27
NZO/HlLtJ m 3.28 4.44   17 1.08 1.35 -0.54
PWK/PhJ f 11.2 10.4   20 2.33 0.927 0.99
PWK/PhJ m 14.1 9.12   22 1.94 0.648 2.1, 34.2 1.44
WSB/EiJ f 6.97 6.34   18 1.49 0.909 0.08
WSB/EiJ m 3.47 2.97   15 0.768 0.856 0.1, 10.8 -0.5


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.5625 1.7348 3.9787 -2.8537
129S1/SvImJ m 0.0533 1.7917 3.5816 -3.4749
A/J f 0.0 1.7348 3.4162 -3.4162
A/J m 0.0 1.7348 3.4162 -3.4162
C57BL/6J f 11.7313 1.7348 15.1474 8.3151
C57BL/6J m 12.2313 1.7348 15.6474 8.8151
CAST/EiJ f 5.7 1.592 8.8349 2.5651
CAST/EiJ m 6.2667 1.6356 9.4875 3.0459
NOD/ShiLtJ f 11.2778 1.6356 14.4986 8.057
NOD/ShiLtJ m 10.3875 1.7348 13.8037 6.9713
NZO/HlLtJ f 5.3529 1.683 8.6671 2.0388
NZO/HlLtJ m 3.2824 1.683 6.5965 -0.0318
PWK/PhJ f 11.235 1.5517 14.2905 8.1795
PWK/PhJ m 14.0773 1.4795 16.9906 11.1639
WSB/EiJ f 6.9722 1.6356 10.193 3.7514
WSB/EiJ m 3.4733 1.7917 7.0016 -0.0549


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.3079 1.247 2.7635 -2.1476
A/J both 0.0 1.2267 2.4156 -2.4156
C57BL/6J both 11.9813 1.2267 14.3969 9.5656
CAST/EiJ both 5.9833 1.1412 8.2306 3.736
NOD/ShiLtJ both 10.8326 1.1922 13.1802 8.4851
NZO/HlLtJ both 4.3176 1.1901 6.6611 1.9742
PWK/PhJ both 12.6561 1.072 14.767 10.5452
WSB/EiJ both 5.2228 1.213 7.6114 2.8342




  GWAS USING LINEAR MIXED MODELS