Project measure / variable:   GMC01   rears_total

ID, description, units MPD:55025   rears_total   number of rears total, 20 min test   [n]  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - number of rears total, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means88.2   n 88.5   n
Median of the strain means105   n 96.5   n
SD of the strain means± 59.5 ± 60.3
Coefficient of variation (CV)0.675 0.681
Min–max range of strain means0.812   –   155   n 1.62   –   160   n
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 6.8573 6.8573 0.0071 0.9329
strain 7 826924.0292 118132.0042 122.5243 < 0.0001
sex:strain 7 10629.6465 1518.5209 1.575 0.143
Residuals 259 249715.3433 964.1519


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 7.44 11.8   16 2.95 1.59 -1.36
129S1/SvImJ m 17.1 18.6   15 4.79 1.09 -1.18
A/J f 0.812 1.87   16 0.467 2.3 -1.47
A/J m 1.62 2.87   16 0.718 1.77 -1.44
C57BL/6J f 124.0 34.4   16 8.61 0.278 63.0, 186.0 0.6
C57BL/6J m 146.0 23.4   16 5.84 0.16 110.0, 186.0 0.95
CAST/EiJ f 135.0 36.3   19 8.32 0.268 72.0, 199.0 0.79
CAST/EiJ m 115.0 25.6   18 6.03 0.223 66.0, 145.0 0.44
NOD/ShiLtJ f 155.0 39.7   18 9.35 0.257 94.0, 237.0 1.12
NOD/ShiLtJ m 160.0 28.7   16 7.17 0.179 98.0, 224.0 1.19
NZO/HlLtJ f 63.9 27.5   17 6.67 0.43 33.0, 127.0 -0.41
NZO/HlLtJ m 53.3 25.3   17 6.15 0.476 16.0, 101.0 -0.58
PWK/PhJ f 134.0 39.0   20 8.71 0.292 68.0, 205.0 0.77
PWK/PhJ m 137.0 34.8   22 7.41 0.253 73.0, 197.0 0.8
WSB/EiJ f 85.2 54.2   18 12.8 0.636 18.0, 226.0 -0.05
WSB/EiJ m 78.1 34.1   15 8.79 0.436 5.0, 128.0 -0.17


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 7.4375 7.7627 22.7235 -7.8485
129S1/SvImJ m 17.0667 8.0173 32.854 1.2793
A/J f 0.8125 7.7627 16.0985 -14.4735
A/J m 1.625 7.7627 16.911 -13.661
C57BL/6J f 123.6875 7.7627 138.9735 108.4015
C57BL/6J m 146.5 7.7627 161.786 131.214
CAST/EiJ f 135.3684 7.1235 149.3959 121.341
CAST/EiJ m 114.5556 7.3187 128.9674 100.1437
NOD/ShiLtJ f 154.6667 7.3187 169.0785 140.2549
NOD/ShiLtJ m 159.75 7.7627 175.036 144.464
NZO/HlLtJ f 63.8824 7.5309 78.712 49.0527
NZO/HlLtJ m 53.2941 7.5309 68.1238 38.4645
PWK/PhJ f 133.6 6.9432 147.2722 119.9278
PWK/PhJ m 137.4545 6.6201 150.4905 124.4186
WSB/EiJ f 85.1667 7.3187 99.5785 70.7549
WSB/EiJ m 78.0667 8.0173 93.854 62.2793


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 12.2521 5.5798 23.2396 1.2646
A/J both 1.2187 5.4891 12.0276 -9.5901
C57BL/6J both 135.0938 5.4891 145.9026 124.2849
CAST/EiJ both 124.962 5.1066 135.0177 114.9063
NOD/ShiLtJ both 157.2083 5.3344 167.7127 146.704
NZO/HlLtJ both 58.5882 5.3252 69.0744 48.1021
PWK/PhJ both 135.5273 4.7967 144.9727 126.0818
WSB/EiJ both 81.6167 5.4277 92.3048 70.9286




  GWAS USING LINEAR MIXED MODELS