Project measure / variable:   GMC01   rears_4

ID, description, units MPD:55024   rears_4   number of rears, successive 5 min intervals   [n]  4th 5min  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - number of rears, successive 5 min intervals 4th 5min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means19.8   n 19.8   n
Median of the strain means20.6   n 17.0   n
SD of the strain means± 15.3 ± 15.6
Coefficient of variation (CV)0.772 0.787
Min–max range of strain means0.312   –   38.6   n 0.375   –   38.7   n
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.1786 1.1786 0.0136 0.9072
strain 7 55737.0007 7962.4287 92.0521 < 0.0001
sex:strain 7 610.5319 87.2188 1.0083 0.4257
Residuals 259 22403.2888 86.4992


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.12 1.82   16 0.455 1.62 -1.22
129S1/SvImJ m 3.27 3.83   15 0.988 1.17 -1.06
A/J f 0.312 0.704   16 0.176 2.25 -1.28
A/J m 0.375 0.806   16 0.202 2.15 -1.25
C57BL/6J f 30.9 10.1   16 2.53 0.328 17.0, 45.0 0.72
C57BL/6J m 36.6 7.64   16 1.91 0.209 25.0, 51.0 1.08
CAST/EiJ f 28.6 8.29   19 1.9 0.29 13.0, 42.0 0.57
CAST/EiJ m 23.2 6.06   18 1.43 0.261 12.0, 32.0 0.22
NOD/ShiLtJ f 38.6 15.2   18 3.59 0.395 11.0, 71.0 1.23
NOD/ShiLtJ m 38.7 9.3   16 2.33 0.24 23.0, 57.0 1.21
NZO/HlLtJ f 11.4 7.28   17 1.77 0.638 -0.55
NZO/HlLtJ m 10.8 6.37   17 1.54 0.588 3.0, 27.0 -0.58
PWK/PhJ f 35.0 13.7   20 3.06 0.392 19.0, 64.0 0.99
PWK/PhJ m 35.0 10.5   22 2.23 0.299 20.0, 58.0 0.97
WSB/EiJ f 12.6 16.9   18 3.98 1.34 -0.47
WSB/EiJ m 10.5 5.41   15 1.4 0.517 1.0, 18.0 -0.6


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.125 2.3251 5.7036 -3.4536
129S1/SvImJ m 3.2667 2.4014 7.9954 -1.462
A/J f 0.3125 2.3251 4.8911 -4.2661
A/J m 0.375 2.3251 4.9536 -4.2036
C57BL/6J f 30.875 2.3251 35.4536 26.2964
C57BL/6J m 36.625 2.3251 41.2036 32.0464
CAST/EiJ f 28.6316 2.1337 32.8331 24.43
CAST/EiJ m 23.2222 2.1921 27.5389 18.9055
NOD/ShiLtJ f 38.5556 2.1921 42.8723 34.2389
NOD/ShiLtJ m 38.6875 2.3251 43.2661 34.1089
NZO/HlLtJ f 11.4118 2.2557 15.8536 6.9699
NZO/HlLtJ m 10.8235 2.2557 15.2654 6.3817
PWK/PhJ f 34.95 2.0797 39.0452 30.8548
PWK/PhJ m 35.0455 1.9829 38.9501 31.1409
WSB/EiJ f 12.6111 2.1921 16.9278 8.2944
WSB/EiJ m 10.4667 2.4014 15.1954 5.738


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.1958 1.6713 5.4869 -1.0952
A/J both 0.3437 1.6441 3.5813 -2.8938
C57BL/6J both 33.75 1.6441 36.9875 30.5125
CAST/EiJ both 25.9269 1.5296 28.9388 22.915
NOD/ShiLtJ both 38.6215 1.5978 41.7678 35.4752
NZO/HlLtJ both 11.1176 1.595 14.2585 7.9768
PWK/PhJ both 34.9977 1.4367 37.8269 32.1686
WSB/EiJ both 11.5389 1.6257 14.7402 8.3375




  GWAS USING LINEAR MIXED MODELS