Project measure / variable:   GMC01   rears_3

ID, description, units MPD:55023   rears_3   number of rears, successive 5 min intervals   [n]  3rd 5min  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - number of rears, successive 5 min intervals 3rd 5min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means21.6   n 21.5   n
Median of the strain means22.9   n 20.4   n
SD of the strain means± 16.1 ± 15.6
Coefficient of variation (CV)0.745 0.725
Min–max range of strain means0.250   –   38.3   n 0.688   –   41.4   n
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.5245 3.5245 0.0409 0.84
strain 7 57355.8487 8193.6927 94.9996 < 0.0001
sex:strain 7 1980.3596 282.9085 3.2801 0.0023
Residuals 259 22338.689 86.2498


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.938 1.88   16 0.47 2.0 -1.28
129S1/SvImJ m 4.53 5.88   15 1.52 1.3 -1.09
A/J f 0.25 0.775   16 0.194 3.1 -1.33
A/J m 0.688 1.35   16 0.338 1.97 -1.33
C57BL/6J f 30.1 9.31   16 2.33 0.309 21.0, 49.0 0.53
C57BL/6J m 37.1 6.99   16 1.75 0.189 25.0, 47.0 1.0
CAST/EiJ f 38.3 12.4   19 2.85 0.325 19.0, 62.0 1.04
CAST/EiJ m 26.6 9.29   18 2.19 0.35 11.0, 48.0 0.33
NOD/ShiLtJ f 37.2 10.8   18 2.54 0.29 17.0, 59.0 0.97
NOD/ShiLtJ m 41.4 6.85   16 1.71 0.165 26.0, 52.0 1.28
NZO/HlLtJ f 13.5 6.84   17 1.66 0.505 2.0, 26.0 -0.5
NZO/HlLtJ m 12.5 7.71   17 1.87 0.619 3.0, 29.0 -0.58
PWK/PhJ f 37.0 10.7   20 2.4 0.29 18.0, 59.0 0.96
PWK/PhJ m 34.9 10.6   22 2.26 0.304 13.0, 54.0 0.86
WSB/EiJ f 15.6 18.1   18 4.28 1.17 -0.37
WSB/EiJ m 14.2 8.3   15 2.14 0.584 2.0, 32.0 -0.47


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.9375 2.3218 5.5094 -3.6344
129S1/SvImJ m 4.5333 2.3979 9.2552 -0.1886
A/J f 0.25 2.3218 4.8219 -4.3219
A/J m 0.6875 2.3218 5.2594 -3.8844
C57BL/6J f 30.125 2.3218 34.6969 25.5531
C57BL/6J m 37.0625 2.3218 41.6344 32.4906
CAST/EiJ f 38.3158 2.1306 42.5113 34.1203
CAST/EiJ m 26.5556 2.189 30.866 22.2451
NOD/ShiLtJ f 37.1667 2.189 41.4771 32.8562
NOD/ShiLtJ m 41.4375 2.3218 46.0094 36.8656
NZO/HlLtJ f 13.5294 2.2524 17.9649 9.094
NZO/HlLtJ m 12.4706 2.2524 16.906 8.0351
PWK/PhJ f 37.0 2.0767 41.0893 32.9107
PWK/PhJ m 34.8636 1.98 38.7626 30.9647
WSB/EiJ f 15.5556 2.189 19.866 11.2451
WSB/EiJ m 14.2 2.3979 18.9219 9.4781


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.7354 1.6689 6.0217 -0.5509
A/J both 0.4687 1.6417 3.7016 -2.7641
C57BL/6J both 33.5938 1.6417 36.8266 30.3609
CAST/EiJ both 32.4357 1.5273 35.4433 29.4281
NOD/ShiLtJ both 39.3021 1.5955 42.4439 36.1603
NZO/HlLtJ both 13.0 1.5927 16.1363 9.8637
PWK/PhJ both 35.9318 1.4347 38.7569 33.1067
WSB/EiJ both 14.8778 1.6234 18.0745 11.681




  GWAS USING LINEAR MIXED MODELS