Project measure / variable:   GMC01   distance_4

ID, description, units MPD:55014   distance_4   distance traveled, successive 5 min intervals   [cm]  4th 5min  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - distance traveled, successive 5 min intervals 4th 5min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means3774   cm 3482   cm
Median of the strain means3124   cm 2955   cm
SD of the strain means± 2822 ± 2545
Coefficient of variation (CV)0.748 0.731
Min–max range of strain means741   –   9005   cm 1176   –   8001   cm
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 9302718.0677 9302718.0677 7.701 0.0059
strain 7 1665603918.1007 237943416.8715 196.9739 < 0.0001
sex:strain 7 21017775.4541 3002539.3506 2.4856 0.0174
Residuals 259 312870564.9118 1207994.4591


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1591.0 1815.0   16 454.0 1.14 236.0, 8076.0 -0.77
129S1/SvImJ m 1287.0 712.0   15 184.0 0.553 146.0, 2649.0 -0.86
A/J f 741.0 568.0   16 142.0 0.766 158.0, 2153.0 -1.07
A/J m 1200.0 1062.0   16 266.0 0.885 472.0, 5025.0 -0.9
C57BL/6J f 6152.0 850.0   16 213.0 0.138 4485.0, 7468.0 0.84
C57BL/6J m 6464.0 1216.0   16 304.0 0.188 4655.0, 8518.0 1.17
CAST/EiJ f 3118.0 520.0   19 119.0 0.167 2239.0, 4403.0 -0.23
CAST/EiJ m 2866.0 658.0   18 155.0 0.23 1780.0, 4360.0 -0.24
NOD/ShiLtJ f 9005.0 2340.0   18 552.0 0.26 4664.0, 14199.0 1.85
NOD/ShiLtJ m 8001.0 1041.0   16 260.0 0.13 5282.0, 9744.0 1.78
NZO/HlLtJ f 1317.0 513.0   17 124.0 0.39 447.0, 2146.0 -0.87
NZO/HlLtJ m 1176.0 436.0   17 106.0 0.37 499.0, 2142.0 -0.91
PWK/PhJ f 3129.0 927.0   20 207.0 0.296 1952.0, 5502.0 -0.23
PWK/PhJ m 3044.0 623.0   22 133.0 0.205 1517.0, 4220.0 -0.17
WSB/EiJ f 5139.0 1479.0   18 349.0 0.288 3149.0, 8189.0 0.48
WSB/EiJ m 3820.0 889.0   15 229.0 0.233 2305.0, 5570.0 0.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1591.0812 274.772 2132.1528 1050.0097
129S1/SvImJ m 1286.8733 283.7833 1845.6896 728.057
A/J f 740.7063 274.772 1281.7778 199.6347
A/J m 1199.8938 274.772 1740.9653 658.8222
C57BL/6J f 6152.3625 274.772 6693.4341 5611.2909
C57BL/6J m 6463.5875 274.772 7004.6591 5922.5159
CAST/EiJ f 3118.2053 252.1481 3614.7266 2621.6839
CAST/EiJ m 2865.95 259.0575 3376.0772 2355.8228
NOD/ShiLtJ f 9005.4667 259.0575 9515.5938 8495.3395
NOD/ShiLtJ m 8001.3313 274.772 8542.4028 7460.2597
NZO/HlLtJ f 1316.8059 266.568 1841.7224 791.8894
NZO/HlLtJ m 1176.3824 266.568 1701.2989 651.4658
PWK/PhJ f 3128.745 245.7636 3612.6941 2644.7959
PWK/PhJ m 3044.2455 234.3264 3505.6728 2582.8181
WSB/EiJ f 5139.0 259.0575 5649.1272 4628.8728
WSB/EiJ m 3819.6867 283.7833 4378.503 3260.8704


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1438.9773 197.5048 1827.897 1050.0576
A/J both 970.3 194.2931 1352.8954 587.7046
C57BL/6J both 6307.975 194.2931 6690.5704 5925.3796
CAST/EiJ both 2992.0776 180.755 3348.0141 2636.1411
NOD/ShiLtJ both 8503.399 188.819 8875.2148 8131.5831
NZO/HlLtJ both 1246.5941 188.492 1617.7661 875.4221
PWK/PhJ both 3086.4952 169.7856 3420.8311 2752.1593
WSB/EiJ both 4479.3433 192.1222 4857.6638 4101.0229




  GWAS USING LINEAR MIXED MODELS