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Project measure / variable:   GMC01   distance_3

ID, description, units MPD:55013   distance_3   distance traveled, successive 5 min intervals   [cm]  3rd 5min  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - distance traveled, successive 5 min intervals 3rd 5min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means3937   cm 3816   cm
Median of the strain means3438   cm 3244   cm
SD of the strain means± 2777 ± 2648
Coefficient of variation (CV)0.705 0.694
Min–max range of strain means741   –   8709   cm 1177   –   8473   cm
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3103465.9091 3103465.9091 2.1443 0.1443
strain 7 1705078643.8782 243582663.4112 168.2998 < 0.0001
sex:strain 7 5755732.8969 822247.5567 0.5681 0.7816
Residuals 259 374854278.4449 1447313.8164


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1723.0 2411.0   16 603.0 1.4 156.0, 10505.0 -0.8
129S1/SvImJ m 1642.0 609.0   15 157.0 0.371 541.0, 2769.0 -0.82
A/J f 741.0 467.0   16 117.0 0.63 227.0, 1670.0 -1.15
A/J m 1177.0 975.0   16 244.0 0.828 386.0, 4529.0 -1.0
C57BL/6J f 6721.0 1366.0   16 342.0 0.203 4393.0, 9511.0 1.0
C57BL/6J m 6770.0 1424.0   16 356.0 0.21 4795.0, 11134.0 1.12
CAST/EiJ f 3679.0 508.0   19 117.0 0.138 2861.0, 4440.0 -0.09
CAST/EiJ m 3501.0 875.0   18 206.0 0.25 2527.0, 5335.0 -0.12
NOD/ShiLtJ f 8709.0 2250.0   18 530.0 0.258 3773.0, 12847.0 1.72
NOD/ShiLtJ m 8473.0 1399.0   16 350.0 0.165 6506.0, 11462.0 1.76
NZO/HlLtJ f 1482.0 675.0   17 164.0 0.455 567.0, 2852.0 -0.88
NZO/HlLtJ m 1434.0 509.0   17 123.0 0.355 829.0, 2543.0 -0.9
PWK/PhJ f 3198.0 635.0   20 142.0 0.199 2368.0, 5010.0 -0.27
PWK/PhJ m 2987.0 737.0   22 157.0 0.247 1478.0, 4745.0 -0.31
WSB/EiJ f 5244.0 1333.0   18 314.0 0.254 3311.0, 7520.0 0.47
WSB/EiJ m 4542.0 956.0   15 247.0 0.211 2610.0, 6302.0 0.27


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1722.6563 300.7609 2314.9042 1130.4083
129S1/SvImJ m 1642.0733 310.6245 2253.7444 1030.4022
A/J f 740.5688 300.7609 1332.8167 148.3208
A/J m 1177.15 300.7609 1769.398 584.902
C57BL/6J f 6721.4563 300.7609 7313.7042 6129.2083
C57BL/6J m 6769.5563 300.7609 7361.8042 6177.3083
CAST/EiJ f 3678.5263 275.9971 4222.0103 3135.0423
CAST/EiJ m 3500.7556 283.5601 4059.1323 2942.3788
NOD/ShiLtJ f 8709.1778 283.5601 9267.5545 8150.801
NOD/ShiLtJ m 8472.9875 300.7609 9065.2355 7880.7395
NZO/HlLtJ f 1482.3706 291.7809 2056.9355 907.8056
NZO/HlLtJ m 1433.9882 291.7809 2008.5532 859.4233
PWK/PhJ f 3198.395 269.0087 3728.1177 2668.6723
PWK/PhJ m 2986.8227 256.4897 3491.8935 2481.7519
WSB/EiJ f 5243.6722 283.5601 5802.049 4685.2955
WSB/EiJ m 4542.16 310.6245 5153.8311 3930.4889


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1682.3648 216.1855 2108.0699 1256.6597
A/J both 958.8594 212.6701 1377.6419 540.0768
C57BL/6J both 6745.5063 212.6701 7164.2888 6326.7237
CAST/EiJ both 3589.6409 197.8514 3979.2431 3200.0387
NOD/ShiLtJ both 8591.0826 206.6782 8998.0661 8184.0991
NZO/HlLtJ both 1458.1794 206.3203 1864.4582 1051.9006
PWK/PhJ both 3092.6089 185.8445 3458.5674 2726.6503
WSB/EiJ both 4892.9161 210.2938 5307.0194 4478.8128




  GWAS USING LINEAR MIXED MODELS