Project measure / variable:   GMC01   distance_2

ID, description, units MPD:55012   distance_2   distance traveled, successive 5 min intervals   [cm]  2nd 5min  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - distance traveled, successive 5 min intervals 2nd 5min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means4578   cm 4294   cm
Median of the strain means3888   cm 3798   cm
SD of the strain means± 3219 ± 2845
Coefficient of variation (CV)0.703 0.663
Min–max range of strain means755   –   10083   cm 1061   –   9101   cm
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 10187682.4083 10187682.4083 5.5837 0.0189
strain 7 2139246251.9275 305606607.4182 167.4992 < 0.0001
sex:strain 7 13445152.0925 1920736.0132 1.0527 0.3948
Residuals 259 472552308.24 1824526.2866


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2172.0 2836.0   16 709.0 1.31 343.0, 12455.0 -0.75
129S1/SvImJ m 2082.0 494.0   15 127.0 0.237 1298.0, 2806.0 -0.78
A/J f 755.0 448.0   16 112.0 0.593 154.0, 1902.0 -1.19
A/J m 1061.0 934.0   16 233.0 0.88 394.0, 4064.0 -1.14
C57BL/6J f 7548.0 1241.0   16 310.0 0.164 5003.0, 9725.0 0.92
C57BL/6J m 7348.0 1566.0   16 391.0 0.213 5403.0, 11368.0 1.07
CAST/EiJ f 4256.0 885.0   19 203.0 0.208 2997.0, 6467.0 -0.1
CAST/EiJ m 4153.0 733.0   18 173.0 0.177 3366.0, 6097.0 -0.05
NOD/ShiLtJ f 10083.0 2643.0   18 623.0 0.262 5709.0, 17352.0 1.71
NOD/ShiLtJ m 9101.0 1520.0   16 380.0 0.167 6637.0, 11616.0 1.69
NZO/HlLtJ f 1755.0 509.0   17 123.0 0.29 879.0, 2580.0 -0.88
NZO/HlLtJ m 1694.0 643.0   17 156.0 0.379 827.0, 3471.0 -0.91
PWK/PhJ f 3521.0 502.0   20 112.0 0.143 2741.0, 4636.0 -0.33
PWK/PhJ m 3444.0 772.0   22 165.0 0.224 2073.0, 5063.0 -0.3
WSB/EiJ f 6536.0 1557.0   18 367.0 0.238 3619.0, 8881.0 0.61
WSB/EiJ m 5470.0 1378.0   15 356.0 0.252 2800.0, 8175.0 0.41


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2172.2313 337.6876 2837.194 1507.2685
129S1/SvImJ m 2082.1 348.7622 2768.8706 1395.3294
A/J f 754.7938 337.6876 1419.7565 89.831
A/J m 1061.3688 337.6876 1726.3315 396.406
C57BL/6J f 7547.7375 337.6876 8212.7002 6882.7748
C57BL/6J m 7347.8688 337.6876 8012.8315 6682.906
CAST/EiJ f 4255.5263 309.8834 4865.738 3645.3147
CAST/EiJ m 4152.6944 318.3749 4779.6273 3525.7616
NOD/ShiLtJ f 10083.35 318.3749 10710.2829 9456.4171
NOD/ShiLtJ m 9101.4062 337.6876 9766.369 8436.4435
NZO/HlLtJ f 1755.4294 327.6051 2400.538 1110.3208
NZO/HlLtJ m 1694.3882 327.6051 2339.4968 1049.2796
PWK/PhJ f 3521.45 302.0369 4116.2107 2926.6893
PWK/PhJ m 3443.6864 287.9809 4010.7685 2876.6042
WSB/EiJ f 6536.4222 318.3749 7163.3551 5909.4894
WSB/EiJ m 5469.8267 348.7622 6156.5972 4783.0561


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2127.1656 242.7282 2605.1377 1649.1936
A/J both 908.0813 238.7812 1378.2809 437.8816
C57BL/6J both 7447.8031 238.7812 7918.0028 6977.6035
CAST/EiJ both 4204.1104 222.1431 4641.547 3766.6738
NOD/ShiLtJ both 9592.3781 232.0536 10049.3301 9135.4262
NZO/HlLtJ both 1724.9088 231.6518 2181.0695 1268.7482
PWK/PhJ both 3482.5682 208.662 3893.4582 3071.6782
WSB/EiJ both 6003.1244 236.1131 6468.0703 5538.1786




  GWAS USING LINEAR MIXED MODELS