Project measure / variable:   Shin1   FC_memory

ID, description, units MPD:54503   FC_memory   percent time freezing during 5 min of contextual exposure   [%]  
Data set, strains Shin1   inbred   11 strains     sex: m     age: 12-14wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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Shin1 - percent time freezing during 5 min of contextual exposure



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means27.8   %
Median of the strain means25.5   %
SD of the strain means± 15.5
Coefficient of variation (CV)0.560
Min–max range of strain means10.0   –   56.9   %
Mean sample size per strain9.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 24794.3875 2479.4387 15.1136 < 0.0001
Residuals 98 16077.2133 164.0532


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 56.9 12.3   12 3.56 0.216 40.7, 77.2 1.88
129S4/SvJaeJ m 44.6 15.7   10 4.97 0.352 10.6, 62.2 1.08
AKR/J m 40.9 15.9   10 5.01 0.388 18.2, 69.8 0.85
BALB/cByJ m 24.1 15.3   13 4.25 0.636 3.62, 46.8 -0.24
BTBR T+ Itpr3tf/J m 16.6 8.18   10 2.59 0.493 5.47, 30.4 -0.72
C3H/HeJ m 10.3 6.73   8 2.38 0.656 5.0, 24.9 -1.12
C57BL/6J m 25.5 12.1   9 4.03 0.474 10.2, 41.1 -0.15
C57BL/6NTac m 33.3 19.1   11 5.76 0.574 14.8, 69.9 0.36
DBA/2J m 32.4 7.68   7 2.9 0.237 21.0, 44.1 0.3
FVB/NJ m 10.0 4.03   7 1.52 0.404 4.38, 15.3 -1.14
NOD/ShiLtJ m 10.7 9.12   12 2.63 0.856 2.99, 36.5 -1.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 56.9092 3.6974 64.2466 49.5717
129S4/SvJaeJ m 44.606 4.0503 52.6438 36.5682
AKR/J m 40.85 4.0503 48.8878 32.8122
BALB/cByJ m 24.0823 3.5524 31.1319 17.0327
BTBR T+ Itpr3tf/J m 16.603 4.0503 24.6408 8.5652
C3H/HeJ m 10.2612 4.5284 19.2478 1.2747
C57BL/6J m 25.49 4.2694 33.9626 17.0174
C57BL/6NTac m 33.2945 3.8619 40.9583 25.6308
DBA/2J m 32.4414 4.8411 42.0484 22.8344
FVB/NJ m 9.9957 4.8411 19.6027 0.3887
NOD/ShiLtJ m 10.655 3.6974 17.9925 3.3175




  GWAS USING LINEAR MIXED MODELS