Project measure / variable:   Shin1   OFL_conditioning

ID, description, units MPD:54501   OFL_conditioning   percent time freezing during 4 min of conditioning (empathic fear)   [%]  
Data set, strains Shin1   inbred   11 strains     sex: m     age: 12-14wks
Procedure observational fear learning test
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  STRAIN COMPARISON PLOT
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Shin1 - percent time freezing during 4 min of conditioning (empathic fear)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means8.68   %
Median of the strain means3.81   %
SD of the strain means± 9.36
Coefficient of variation (CV)1.08
Min–max range of strain means0.787   –   30.4   %
Mean sample size per strain13.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 11766.2364 1176.6236 13.9694 < 0.0001
Residuals 134 11286.6515 84.2287


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 30.4 22.1   14 5.9 0.727 3.47, 79.7 2.32
129S4/SvJaeJ m 12.0 7.88   16 1.97 0.657 2.4, 33.4 0.35
AKR/J m 1.97 1.69   15 0.438 0.859 0.14, 5.36 -0.72
BALB/cByJ m 1.5 1.9   14 0.507 1.27 -0.77
BTBR T+ Itpr3tf/J m 13.5 8.26   14 2.21 0.612 0.89, 26.6 0.51
C3H/HeJ m 3.81 2.07   9 0.689 0.543 0.9, 6.2 -0.52
C57BL/6J m 9.63 7.21   16 1.8 0.748 3.18, 25.8 0.1
C57BL/6NTac m 18.3 11.0   19 2.53 0.601 2.04, 42.5 1.03
DBA/2J m 1.89 0.953   9 0.318 0.504 0.87, 3.52 -0.73
FVB/NJ m 1.73 1.94   9 0.645 1.12 -0.74
NOD/ShiLtJ m 0.787 0.442   10 0.14 0.562 0.11, 1.42 -0.84


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 30.4086 2.4528 35.2598 25.5573
129S4/SvJaeJ m 11.9838 2.2944 16.5217 7.4458
AKR/J m 1.9727 2.3697 6.6594 0.0
BALB/cByJ m 1.4986 2.4528 6.3498 0.0
BTBR T+ Itpr3tf/J m 13.4921 2.4528 18.3434 8.6409
C3H/HeJ m 3.81 3.0592 9.8606 0.0
C57BL/6J m 9.6313 2.2944 14.1692 5.0933
C57BL/6NTac m 18.3411 2.1055 22.5053 14.1768
DBA/2J m 1.8922 3.0592 7.9428 0.0
FVB/NJ m 1.7311 3.0592 7.7817 0.0
NOD/ShiLtJ m 0.787 2.9022 6.5271 0.0




  GWAS USING LINEAR MIXED MODELS