Phenotype measure:   Rusyn6   Acox1_kidney_tce

ID, description, units MPD:51268   Acox1_kidney_tce   Acox1, mRNA in kidney, relative to control group   [ratio]
trichloroethylene study
Data set, strains Rusyn6   inbred   7 strains     sex: m     age: 6-7wks
Procedure RNA expression profiling
Ontology mappings

  STRAIN COMPARISON PLOT
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Rusyn6 - Acox1, mRNA in kidney, relative to control group



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested7 strains
Mean of the strain means2.21   ratio
Median of the strain means1.30   ratio
SD of the strain means± 1.85
Coefficient of variation (CV)0.837
Min–max range of strain means1.17   –   6.23   ratio
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 6 61.4029 10.2338 2.6065 0.0655
Residuals 14 54.9667 3.9262


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.3 0.1   3 0.0577 0.0769 1.2, 1.4 -0.49
A/J m 1.77 1.29   3 0.745 0.73 0.7, 3.2 -0.24
BTBR T+ Itpr3tf/J m 1.2 0.361   3 0.208 0.3 0.9, 1.6 -0.54
C57BL/6J m 2.57 2.4   3 1.39 0.935 0.8, 5.3 0.2
CAST/EiJ m 1.17 0.208   3 0.12 0.178 1.0, 1.4 -0.56
NOD/ShiLtJ m 6.23 4.45   3 2.57 0.715 1.9, 10.8 2.18
NZW/LacJ m 1.2 0.173   3 0.1 0.144 1.0, 1.3 -0.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.3 1.144 3.7536 0.0
A/J m 1.7667 1.144 4.2203 0.0
BTBR T+ Itpr3tf/J m 1.2 1.144 3.6536 0.0
C57BL/6J m 2.5667 1.144 5.0203 0.113
CAST/EiJ m 1.1667 1.144 3.6203 0.0
NOD/ShiLtJ m 6.2333 1.144 8.687 3.7797
NZW/LacJ m 1.2 1.144 3.6536 0.0




GWAS analysis not available: At least 12 strains are required