Project measure / variable:   Rusyn6   Acox1_kidney_tce

ID, description, units MPD:51268   Acox1_kidney_tce   Acox1, mRNA in kidney, relative to control group   [ratio]  
trichloroethylene study
Data set, strains Rusyn6   inbred   7 strains     sex: m     age: 6-7wks
Procedure RNA expression profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rusyn6 - Acox1, mRNA in kidney, relative to control group

NOD/ShiLtJC57BL/6JA/J129S1/SvImJBTBR T<+> Itpr3<tf>/JNZW/LacJCAST/EiJ ratio 01234567891011femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested7 strains
Mean of the strain means2.21   ratio
Median of the strain means1.30   ratio
SD of the strain means± 1.85
Coefficient of variation (CV)0.837
Min–max range of strain means1.17   –   6.23   ratio
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 6 61.4029 10.2338 2.6065 0.0655
Residuals 14 54.9667 3.9262


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129S1/SvImJ m 1.3 0.1   3 0.0577 0.0769 1.2, 1.4 -0.49
A/J m 1.77 1.29   3 0.745 0.73 0.7, 3.2 -0.24
BTBR T+ Itpr3tf/J m 1.2 0.361   3 0.208 0.3 0.9, 1.6 -0.54
C57BL/6J m 2.57 2.4   3 1.39 0.935 0.8, 5.3 0.2
CAST/EiJ m 1.17 0.208   3 0.12 0.178 1.0, 1.4 -0.56
NOD/ShiLtJ m 6.23 4.45   3 2.57 0.715 1.9, 10.8 2.18
NZW/LacJ m 1.2 0.173   3 0.1 0.144 1.0, 1.3 -0.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.3 1.144 3.7536 0.0
A/J m 1.7667 1.144 4.2203 0.0
BTBR T+ Itpr3tf/J m 1.2 1.144 3.6536 0.0
C57BL/6J m 2.5667 1.144 5.0203 0.113
CAST/EiJ m 1.1667 1.144 3.6203 0.0
NOD/ShiLtJ m 6.2333 1.144 8.687 3.7797
NZW/LacJ m 1.2 1.144 3.6536 0.0




  GWAS USING LINEAR MIXED MODELS

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