Project measure / variable:   Tarantino2   OFT_thigmotaxis_ctrl

ID, description, units MPD:50631   OFT_thigmotaxis_ctrl   distance traveled in periphery of arena, 10 min test   [cm]  control  
ovariectomy study
Data set, strains Tarantino2   inbred   37 strains     sex: f     age: 10-12wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino2 - distance traveled in periphery of arena, 10 min test control



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested37 strains
Mean of the strain means1830   cm
Median of the strain means1937   cm
SD of the strain means± 741
Coefficient of variation (CV)0.405
Min–max range of strain means488   –   3578   cm
Mean sample size per strain9.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 36 179706213.6562 4991839.2682 7.5123 < 0.0001
Residuals 316 209977145.0237 664484.6362


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 724.0 592.0   10 187.0 0.818 61.0, 1610.0 -1.49
A/J f 488.0 343.0   11 103.0 0.701 21.0, 910.0 -1.81
AKR/J f 2420.0 544.0   11 164.0 0.225 1828.0, 3514.0 0.8
BALB/cByJ f 1865.0 185.0   11 55.9 0.0994 1614.0, 2124.0 0.05
BTBR T+ Itpr3tf/J f 2313.0 532.0   11 160.0 0.23 1355.0, 3100.0 0.65
C3H/HeJ f 853.0 234.0   11 70.6 0.275 542.0, 1356.0 -1.32
C57BL/6J f 1986.0 378.0   20 84.4 0.19 978.0, 2499.0 0.21
C57BR/cdJ f 3488.0 1874.0   6 765.0 0.537 1691.0, 6810.0 2.24
C57L/J f 1253.0 311.0   11 93.9 0.249 774.0, 1761.0 -0.78
C58/J f 3578.0 2865.0   10 906.0 0.801 1719.0, 9145.0 2.36
CBA/J f 846.0 266.0   11 80.3 0.315 417.0, 1218.0 -1.33
CZECHII/EiJ f 2010.0 364.0   5 163.0 0.181 1593.0, 2484.0 0.24
DBA/2J f 1033.0 557.0   9 186.0 0.539 90.0, 2000.0 -1.07
FVB/NJ f 1751.0 307.0   10 97.1 0.175 1319.0, 2243.0 -0.11
I/LnJ f 1990.0 612.0   12 177.0 0.307 1168.0, 2883.0 0.22
KK/HlJ f 1384.0 309.0   6 126.0 0.223 980.0, 1701.0 -0.6
LG/J f 1679.0 570.0   10 180.0 0.339 269.0, 2514.0 -0.2
LP/J f 1463.0 428.0   9 143.0 0.293 762.0, 2272.0 -0.49
MA/MyJ f 2453.0 443.0   9 148.0 0.18 1872.0, 3188.0 0.84
MOLF/EiJ f 1998.0 298.0   7 113.0 0.149 1692.0, 2607.0 0.23
MRL/MpJ f 1937.0 494.0   10 156.0 0.255 1151.0, 2858.0 0.14
NOD/ShiLtJ f 2186.0 1054.0   10 333.0 0.482 642.0, 4636.0 0.48
NON/ShiLtJ f 2774.0 2290.0   12 661.0 0.825 1160.0, 9230.0 1.27
NOR/LtJ f 2020.0 510.0   12 147.0 0.252 1078.0, 2831.0 0.26
NZO/HlLtJ f 682.0 235.0   7 88.7 0.344 229.0, 973.0 -1.55
NZW/LacJ f 1357.0 251.0   10 79.3 0.185 1067.0, 1818.0 -0.64
PERA/EiJ f 1432.0 486.0   8 172.0 0.34 887.0, 2082.0 -0.54
P/J f 1960.0 352.0   8 124.0 0.18 1281.0, 2302.0 0.18
PL/J f 2204.0 297.0   10 93.9 0.135 1601.0, 2608.0 0.51
PWD/PhJ f 1410.0 453.0   6 185.0 0.321 900.0, 2144.0 -0.57
RIIIS/J f 2207.0 277.0   6 113.0 0.126 2014.0, 2712.0 0.51
SEA/GnJ f 1278.0 321.0   6 131.0 0.251 949.0, 1839.0 -0.74
SJL/J f 1494.0 283.0   10 89.4 0.189 1001.0, 1939.0 -0.45
SM/J f 2246.0 507.0   12 146.0 0.226 1418.0, 3205.0 0.56
SWR/J f 1521.0 217.0   12 62.5 0.142 1130.0, 1830.0 -0.42
WSB/EiJ f 3465.0 831.0   8 294.0 0.24 2521.0, 4877.0 2.21
ZALENDE/EiJ f 1950.0 295.0   6 120.0 0.151 1656.0, 2365.0 0.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 724.2 257.776 1231.3741 217.0259
A/J f 488.4545 245.7798 972.0261 4.883
AKR/J f 2420.0 245.7798 2903.5716 1936.4284
BALB/cByJ f 1865.1818 245.7798 2348.7534 1381.6102
BTBR T+ Itpr3tf/J f 2313.0 245.7798 2796.5716 1829.4284
C3H/HeJ f 852.8182 245.7798 1336.3898 369.2466
C57BL/6J f 1986.05 182.2752 2344.6763 1627.4237
C57BR/cdJ f 3487.6667 332.7874 4142.4257 2832.9077
C57L/J f 1252.5455 245.7798 1736.117 768.9739
C58/J f 3578.1 257.776 4085.2741 3070.9259
CBA/J f 846.0 245.7798 1329.5716 362.4284
CZECHII/EiJ f 2009.6 364.5503 2726.8526 1292.3474
DBA/2J f 1033.4444 271.7198 1568.0529 498.836
FVB/NJ f 1750.7 257.776 2257.8741 1243.5259
I/LnJ f 1990.1667 235.3162 2453.1512 1527.1821
KK/HlJ f 1384.1667 332.7874 2038.9257 729.4077
LG/J f 1679.2 257.776 2186.3741 1172.0259
LP/J f 1462.8889 271.7198 1997.4974 928.2804
MA/MyJ f 2453.4444 271.7198 2988.0529 1918.836
MOLF/EiJ f 1998.1429 308.1012 2604.3319 1391.9538
MRL/MpJ f 1937.1 257.776 2444.2741 1429.9259
NOD/ShiLtJ f 2185.5 257.776 2692.6741 1678.3259
NON/ShiLtJ f 2774.5 235.3162 3237.4845 2311.5155
NOR/LtJ f 2020.5 235.3162 2483.4845 1557.5155
NZO/HlLtJ f 682.4286 308.1012 1288.6176 76.2395
NZW/LacJ f 1356.6 257.776 1863.7741 849.4259
PERA/EiJ f 1431.5 288.2023 1998.5379 864.4621
P/J f 1960.0 288.2023 2527.0379 1392.9621
PL/J f 2203.8 257.776 2710.9741 1696.6259
PWD/PhJ f 1409.6667 332.7874 2064.4257 754.9077
RIIIS/J f 2206.8333 332.7874 2861.5923 1552.0743
SEA/GnJ f 1278.1667 332.7874 1932.9257 623.4077
SJL/J f 1493.8 257.776 2000.9741 986.6259
SM/J f 2246.25 235.3162 2709.2345 1783.2655
SWR/J f 1520.75 235.3162 1983.7345 1057.7655
WSB/EiJ f 3465.125 288.2023 4032.1629 2898.0871
ZALENDE/EiJ f 1949.8333 332.7874 2604.5923 1295.0743




  GWAS USING LINEAR MIXED MODELS