Project measure / variable:   Tarantino2   OFT_center_duration_pct_trt

ID, description, units MPD:50627   OFT_center_duration_pct_trt   percentage of time spent in center of arena, 10 min test   [%]  ovariectomy  
ovariectomy study
Data set, strains Tarantino2   inbred   37 strains     sex: f     age: 10-12wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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Tarantino2 - percentage of time spent in center of arena, 10 min test ovariectomy



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested37 strains
Mean of the strain means9.85   %
Median of the strain means8.85   %
SD of the strain means± 5.42
Coefficient of variation (CV)0.551
Min–max range of strain means0.825   –   22.9   %
Mean sample size per strain9.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 36 9301.3482 258.3708 9.6661 < 0.0001
Residuals 307 8206.0122 26.7297


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.34 7.94   9 2.65 2.38 -1.2
A/J f 0.825 2.22   10 0.703 2.69 -1.66
AKR/J f 9.71 3.53   10 1.12 0.364 1.87, 14.6 -0.03
BALB/cByJ f 3.25 3.03   13 0.841 0.934 -1.22
BTBR T+ Itpr3tf/J f 6.79 3.83   9 1.28 0.565 0.9, 12.1 -0.56
C3H/HeJ f 11.2 6.47   9 2.16 0.576 3.07, 25.4 0.25
C57BL/6J f 11.3 3.99   18 0.941 0.354 0.817, 17.2 0.27
C57BR/cdJ f 20.8 5.16   6 2.11 0.248 13.9, 26.7 2.02
C57L/J f 17.5 6.63   7 2.51 0.378 5.3, 22.5 1.41
C58/J f 11.4 5.13   10 1.62 0.449 4.92, 19.6 0.29
CBA/J f 8.85 5.58   14 1.49 0.631 1.08, 21.0 -0.18
CZECHII/EiJ f 4.85 1.12   5 0.5 0.23 3.48, 6.1 -0.92
DBA/2J f 1.81 1.68   12 0.485 0.928 0.0167, 4.2 -1.48
FVB/NJ f 13.3 3.41   10 1.08 0.256 7.57, 20.1 0.64
I/LnJ f 11.0 5.36   13 1.49 0.488 5.22, 23.4 0.21
KK/HlJ f 11.0 5.74   9 1.91 0.523 2.35, 17.9 0.21
LG/J f 8.51 6.5   10 2.05 0.764 -0.25
LP/J f 2.18 1.56   8 0.551 0.714 0.0667, 4.48 -1.41
MA/MyJ f 22.9 6.6   7 2.49 0.288 14.1, 31.6 2.41
MOLF/EiJ f 7.47 3.42   7 1.29 0.458 3.65, 12.9 -0.44
MRL/MpJ f 7.39 5.21   10 1.65 0.705 0.1, 15.3 -0.45
NOD/ShiLtJ f 20.5 5.03   11 1.52 0.245 13.7, 28.4 1.96
NON/ShiLtJ f 14.2 4.8   12 1.39 0.339 5.92, 25.9 0.8
NOR/LtJ f 19.3 10.6   10 3.34 0.549 8.52, 41.4 1.74
NZO/HlLtJ f 3.84 3.52   7 1.33 0.917 0.0667, 8.73 -1.11
NZW/LacJ f 6.8 3.66   10 1.16 0.539 2.18, 12.2 -0.56
PERA/EiJ f 7.5 3.01   8 1.06 0.401 4.42, 13.7 -0.43
P/J f 8.83 3.84   8 1.36 0.435 2.95, 16.0 -0.19
PL/J f 13.0 3.3   9 1.1 0.253 8.18, 19.5 0.58
PWD/PhJ f 6.24 3.51   5 1.57 0.563 0.117, 8.62 -0.67
RIIIS/J f 10.7 2.28   7 0.86 0.212 8.62, 14.6 0.16
SEA/GnJ f 6.23 3.99   7 1.51 0.641 0.117, 10.8 -0.67
SJL/J f 13.4 12.0   10 3.81 0.899 1.03, 33.5 0.65
SM/J f 6.28 3.03   9 1.01 0.483 4.6, 14.2 -0.66
SWR/J f 12.9 4.75   12 1.37 0.367 7.45, 21.2 0.56
WSB/EiJ f 8.1 2.06   6 0.841 0.254 5.17, 11.6 -0.32
ZALENDE/EiJ f 11.2 5.28   7 2.0 0.471 5.28, 20.2 0.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.3407 1.7234 6.7318 0.0
A/J f 0.825 1.6349 4.0421 0.0
AKR/J f 9.709 1.6349 12.9261 6.4919
BALB/cByJ f 3.2474 1.4339 6.069 0.4259
BTBR T+ Itpr3tf/J f 6.7852 1.7234 10.1763 3.3941
C3H/HeJ f 11.2222 1.7234 14.6133 7.8311
C57BL/6J f 11.2828 1.2186 13.6807 8.885
C57BR/cdJ f 20.78 2.1107 24.9332 16.6268
C57L/J f 17.5457 1.9541 21.3908 13.7006
C58/J f 11.4384 1.6349 14.6555 8.2213
CBA/J f 8.8491 1.3818 11.568 6.1302
CZECHII/EiJ f 4.8532 2.3121 9.4028 0.3036
DBA/2J f 1.8111 1.4925 4.7479 0.0
FVB/NJ f 13.3087 1.6349 16.5258 10.0916
I/LnJ f 10.979 1.4339 13.8006 8.1574
KK/HlJ f 10.9796 1.7234 14.3706 7.5885
LG/J f 8.5076 1.6349 11.7246 5.2905
LP/J f 2.1835 1.8279 5.7803 0.0
MA/MyJ f 22.9186 1.9541 26.7637 19.0734
MOLF/EiJ f 7.4714 1.9541 11.3166 3.6263
MRL/MpJ f 7.3903 1.6349 10.6074 4.1733
NOD/ShiLtJ f 20.5136 1.5588 23.581 17.4463
NON/ShiLtJ f 14.1837 1.4925 17.1204 11.2469
NOR/LtJ f 19.2524 1.6349 22.4695 16.0353
NZO/HlLtJ f 3.8381 1.9541 7.6832 0.0
NZW/LacJ f 6.7962 1.6349 10.0133 3.5791
PERA/EiJ f 7.5 1.8279 11.0968 3.9032
P/J f 8.8284 1.8279 12.4252 5.2316
PL/J f 13.0426 1.7234 16.4336 9.6515
PWD/PhJ f 6.2367 2.3121 10.7864 1.6871
RIIIS/J f 10.7191 1.9541 14.5643 6.874
SEA/GnJ f 6.231 1.9541 10.0761 2.3858
SJL/J f 13.3834 1.6349 16.6005 10.1663
SM/J f 6.2778 1.7234 9.6689 2.8867
SWR/J f 12.9243 1.4925 15.861 9.9875
WSB/EiJ f 8.0995 2.1107 12.2527 3.9463
ZALENDE/EiJ f 11.2229 1.9541 15.068 7.3777




  GWAS USING LINEAR MIXED MODELS