Project measure / variable:   Tarantino2   OFT_center_duration_trt

ID, description, units MPD:50622   OFT_center_duration_trt   duration in center of arena, 10 min test   [s]  ovariectomy  
ovariectomy study
Data set, strains Tarantino2   inbred   37 strains     sex: f     age: 10-12wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino2 - duration in center of arena, 10 min test ovariectomy



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested37 strains
Mean of the strain means59.1   s
Median of the strain means53.1   s
SD of the strain means± 32.6
Coefficient of variation (CV)0.552
Min–max range of strain means4.95   –   138   s
Mean sample size per strain9.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 36 334859.8474 9301.6624 9.6664 < 0.0001
Residuals 307 295416.5938 962.269


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 20.0 47.6   9 15.9 2.38 -1.2
A/J f 4.95 13.3   10 4.22 2.69 -1.66
AKR/J f 58.3 21.2   10 6.7 0.364 11.2, 87.5 -0.03
BALB/cByJ f 19.5 18.2   13 5.05 0.934 -1.21
BTBR T+ Itpr3tf/J f 40.7 23.0   9 7.66 0.565 5.4, 72.7 -0.56
C3H/HeJ f 67.3 38.8   9 12.9 0.576 18.4, 152.0 0.25
C57BL/6J f 67.7 23.9   18 5.64 0.354 4.9, 103.0 0.26
C57BR/cdJ f 125.0 31.0   6 12.6 0.248 83.2, 160.0 2.02
C57L/J f 105.0 39.8   7 15.0 0.378 31.8, 135.0 1.41
C58/J f 68.6 30.8   10 9.74 0.449 29.5, 118.0 0.29
CBA/J f 53.1 33.5   14 8.95 0.631 6.5, 126.0 -0.18
CZECHII/EiJ f 29.1 6.71   5 3.0 0.23 20.9, 36.6 -0.92
DBA/2J f 10.9 10.1   12 2.91 0.928 0.1, 25.2 -1.48
FVB/NJ f 79.8 20.5   10 6.48 0.256 45.4, 120.0 0.63
I/LnJ f 65.9 32.2   13 8.92 0.488 31.3, 141.0 0.21
KK/HlJ f 65.9 34.4   9 11.5 0.523 14.1, 108.0 0.21
LG/J f 51.0 39.0   10 12.3 0.764 -0.25
LP/J f 13.1 9.35   8 3.31 0.714 0.4, 26.9 -1.41
MA/MyJ f 138.0 39.6   7 15.0 0.288 84.6, 190.0 2.42
MOLF/EiJ f 44.8 20.5   7 7.76 0.458 21.9, 77.7 -0.44
MRL/MpJ f 44.3 31.3   10 9.88 0.705 0.6, 92.0 -0.45
NOD/ShiLtJ f 123.0 30.2   11 9.1 0.245 82.2, 170.0 1.96
NON/ShiLtJ f 85.1 28.8   12 8.32 0.339 35.5, 156.0 0.8
NOR/LtJ f 116.0 63.5   10 20.1 0.549 51.1, 248.0 1.74
NZO/HlLtJ f 23.0 21.1   7 7.98 0.917 0.4, 52.4 -1.11
NZW/LacJ f 40.8 22.0   10 6.95 0.539 13.1, 73.0 -0.56
PERA/EiJ f 45.0 18.1   8 6.39 0.401 26.5, 82.2 -0.43
P/J f 53.0 23.0   8 8.14 0.435 17.7, 96.1 -0.19
PL/J f 78.3 19.8   9 6.59 0.253 49.1, 117.0 0.59
PWD/PhJ f 37.4 21.1   5 9.42 0.563 0.7, 51.7 -0.67
RIIIS/J f 64.3 13.7   7 5.16 0.212 51.7, 87.5 0.16
SEA/GnJ f 37.4 23.9   7 9.05 0.641 0.7, 65.1 -0.67
SJL/J f 80.3 72.2   10 22.8 0.899 6.2, 201.0 0.65
SM/J f 37.7 18.2   9 6.07 0.483 27.6, 85.5 -0.66
SWR/J f 77.5 28.5   12 8.22 0.367 44.7, 128.0 0.56
WSB/EiJ f 48.6 12.4   6 5.05 0.254 31.0, 69.8 -0.32
ZALENDE/EiJ f 67.3 31.7   7 12.0 0.471 31.7, 122.0 0.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 20.0444 10.3402 40.391 0.0
A/J f 4.95 9.8095 24.2524 0.0
AKR/J f 58.26 9.8095 77.5624 38.9576
BALB/cByJ f 19.4846 8.6035 36.414 2.5553
BTBR T+ Itpr3tf/J f 40.7111 10.3402 61.0577 20.3646
C3H/HeJ f 67.3333 10.3402 87.6799 46.9868
C57BL/6J f 67.6944 7.3116 82.0816 53.3073
C57BR/cdJ f 124.6833 12.6641 149.6027 99.764
C57L/J f 105.2714 11.7246 128.3422 82.2006
C58/J f 68.63 9.8095 87.9324 49.3276
CBA/J f 53.0929 8.2906 69.4064 36.7793
CZECHII/EiJ f 29.12 13.8728 56.4177 1.8223
DBA/2J f 10.8667 8.9548 28.4873 0.0
FVB/NJ f 79.85 9.8095 99.1524 60.5476
I/LnJ f 65.8769 8.6035 82.8063 48.9476
KK/HlJ f 65.8778 10.3402 86.2243 45.5312
LG/J f 51.05 9.8095 70.3524 31.7476
LP/J f 13.1 10.9674 34.6808 0.0
MA/MyJ f 137.5143 11.7246 160.5851 114.4435
MOLF/EiJ f 44.8286 11.7246 67.8994 21.7578
MRL/MpJ f 44.34 9.8095 63.6424 25.0376
NOD/ShiLtJ f 123.0818 9.353 141.486 104.6777
NON/ShiLtJ f 85.1083 8.9548 102.729 67.4877
NOR/LtJ f 115.52 9.8095 134.8224 96.2176
NZO/HlLtJ f 23.0286 11.7246 46.0994 0.0
NZW/LacJ f 40.78 9.8095 60.0824 21.4776
PERA/EiJ f 45.0 10.9674 66.5808 23.4192
P/J f 52.9625 10.9674 74.5433 31.3817
PL/J f 78.2556 10.3402 98.6021 57.909
PWD/PhJ f 37.42 13.8728 64.7177 10.1223
RIIIS/J f 64.3143 11.7246 87.3851 41.2435
SEA/GnJ f 37.3857 11.7246 60.4565 14.3149
SJL/J f 80.3 9.8095 99.6024 60.9976
SM/J f 37.6667 10.3402 58.0132 17.3201
SWR/J f 77.5417 8.9548 95.1623 59.921
WSB/EiJ f 48.6 12.6641 73.5193 23.6807
ZALENDE/EiJ f 67.3429 11.7246 90.4137 44.272




  GWAS USING LINEAR MIXED MODELS