Project measure / variable:   Tarantino2   OFT_vertical_trt

ID, description, units MPD:50612   OFT_vertical_trt   number of vertical movements, 10 min teste   [n]  ovariectomy  
ovariectomy study
Data set, strains Tarantino2   inbred   37 strains     sex: f     age: 10-12wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino2 - number of vertical movements, 10 min teste ovariectomy



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested37 strains
Mean of the strain means61.3   n
Median of the strain means63.4   n
SD of the strain means± 31.2
Coefficient of variation (CV)0.509
Min–max range of strain means2.22   –   119   n
Mean sample size per strain9.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 36 328739.127 9131.6424 19.171 < 0.0001
Residuals 307 146232.0823 476.326


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.22 2.91   9 0.969 1.31 -1.89
A/J f 5.4 4.5   10 1.42 0.834 1.0, 14.0 -1.79
AKR/J f 46.3 23.1   10 7.31 0.499 19.0, 82.0 -0.48
BALB/cByJ f 28.2 24.2   13 6.72 0.859 1.0, 94.0 -1.06
BTBR T+ Itpr3tf/J f 33.6 21.1   9 7.04 0.63 3.0, 68.0 -0.89
C3H/HeJ f 52.0 19.5   9 6.49 0.374 25.0, 73.0 -0.3
C57BL/6J f 64.7 19.9   18 4.7 0.308 5.0, 91.0 0.11
C57BR/cdJ f 100.0 25.4   6 10.4 0.254 74.0, 144.0 1.24
C57L/J f 77.3 22.4   7 8.47 0.29 47.0, 112.0 0.51
C58/J f 89.2 31.0   10 9.79 0.347 29.0, 140.0 0.89
CBA/J f 7.93 10.0   14 2.68 1.26 -1.71
CZECHII/EiJ f 42.6 8.88   5 3.97 0.208 33.0, 57.0 -0.6
DBA/2J f 25.2 24.0   12 6.92 0.953 -1.16
FVB/NJ f 108.0 16.2   10 5.11 0.149 84.0, 138.0 1.49
I/LnJ f 44.1 17.5   13 4.84 0.396 20.0, 67.0 -0.55
KK/HlJ f 37.2 25.9   9 8.62 0.695 15.0, 84.0 -0.77
LG/J f 75.5 42.0   10 13.3 0.557 19.0, 145.0 0.45
LP/J f 18.2 11.2   8 3.96 0.613 5.0, 38.0 -1.38
MA/MyJ f 119.0 11.8   7 4.45 0.0993 101.0, 132.0 1.85
MOLF/EiJ f 84.3 19.0   7 7.18 0.225 57.0, 116.0 0.73
MRL/MpJ f 60.6 25.0   10 7.91 0.413 21.0, 101.0 -0.02
NOD/ShiLtJ f 99.1 19.7   11 5.95 0.199 66.0, 127.0 1.21
NON/ShiLtJ f 80.1 21.9   12 6.31 0.273 48.0, 115.0 0.6
NOR/LtJ f 52.0 32.3   10 10.2 0.621 -0.3
NZO/HlLtJ f 37.9 21.1   7 7.97 0.557 4.0, 65.0 -0.75
NZW/LacJ f 55.3 25.3   10 8.0 0.457 -0.19
PERA/EiJ f 63.4 9.56   8 3.38 0.151 53.0, 76.0 0.07
P/J f 80.0 21.1   8 7.47 0.264 46.0, 115.0 0.6
PL/J f 101.0 21.6   9 7.21 0.215 61.0, 125.0 1.27
PWD/PhJ f 37.6 26.6   5 11.9 0.707 -0.76
RIIIS/J f 91.6 21.7   7 8.2 0.237 72.0, 136.0 0.97
SEA/GnJ f 63.6 37.1   7 14.0 0.584 9.0, 109.0 0.07
SJL/J f 73.0 24.7   10 7.8 0.338 35.0, 114.0 0.37
SM/J f 31.2 16.7   9 5.58 0.536 3.0, 55.0 -0.97
SWR/J f 100.0 10.6   12 3.05 0.105 85.0, 118.0 1.24
WSB/EiJ f 83.7 18.8   6 7.66 0.224 48.0, 98.0 0.72
ZALENDE/EiJ f 98.7 18.8   7 7.09 0.19 68.0, 125.0 1.2


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.2222 7.275 16.5373 0.0
A/J f 5.4 6.9016 18.9805 0.0
AKR/J f 46.3 6.9016 59.8805 32.7195
BALB/cByJ f 28.2308 6.0531 40.1417 16.3199
BTBR T+ Itpr3tf/J f 33.5556 7.275 47.8707 19.2405
C3H/HeJ f 52.0 7.275 66.3151 37.6849
C57BL/6J f 64.7222 5.1442 74.8445 54.5999
C57BR/cdJ f 100.0 8.91 117.5323 82.4677
C57L/J f 77.2857 8.249 93.5175 61.0539
C58/J f 89.2 6.9016 102.7805 75.6195
CBA/J f 7.9286 5.8329 19.4062 0.0
CZECHII/EiJ f 42.6 9.7604 61.8057 23.3943
DBA/2J f 25.1667 6.3003 37.5639 12.7694
FVB/NJ f 108.5 6.9016 122.0805 94.9195
I/LnJ f 44.0769 6.0531 55.9878 32.166
KK/HlJ f 37.2222 7.275 51.5373 22.9071
LG/J f 75.5 6.9016 89.0805 61.9195
LP/J f 18.25 7.7163 33.4335 3.0665
MA/MyJ f 118.7143 8.249 134.9461 102.4825
MOLF/EiJ f 84.2857 8.249 100.5175 68.0539
MRL/MpJ f 60.6 6.9016 74.1805 47.0195
NOD/ShiLtJ f 99.0909 6.5805 112.0394 86.1424
NON/ShiLtJ f 80.0833 6.3003 92.4806 67.6861
NOR/LtJ f 52.0 6.9016 65.5805 38.4195
NZO/HlLtJ f 37.8571 8.249 54.0889 21.6253
NZW/LacJ f 55.3 6.9016 68.8805 41.7195
PERA/EiJ f 63.375 7.7163 78.5585 48.1915
P/J f 80.0 7.7163 95.1835 64.8165
PL/J f 100.5556 7.275 114.8707 86.2405
PWD/PhJ f 37.6 9.7604 56.8057 18.3943
RIIIS/J f 91.5714 8.249 107.8032 75.3396
SEA/GnJ f 63.5714 8.249 79.8032 47.3396
SJL/J f 73.0 6.9016 86.5805 59.4195
SM/J f 31.2222 7.275 45.5373 16.9071
SWR/J f 100.5 6.3003 112.8972 88.1028
WSB/EiJ f 83.6667 8.91 101.199 66.1343
ZALENDE/EiJ f 98.7143 8.249 114.9461 82.4825




  GWAS USING LINEAR MIXED MODELS