Project measure / variable:   Tarantino2   OFT_distance_trt

ID, description, units MPD:50602   OFT_distance_trt   distance traveled, 10 min test   [cm]  ovariectomy  
ovariectomy study
Data set, strains Tarantino2   inbred   37 strains     sex: f     age: 10-12wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino2 - distance traveled, 10 min test ovariectomy



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested37 strains
Mean of the strain means2190   cm
Median of the strain means2321   cm
SD of the strain means± 921
Coefficient of variation (CV)0.420
Min–max range of strain means387   –   3961   cm
Mean sample size per strain9.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 36 270659229.221 7518311.9228 20.1236 < 0.0001
Residuals 307 114697464.6365 373607.3767


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 726.0 499.0   9 166.0 0.687 37.0, 1373.0 -1.59
A/J f 387.0 249.0   10 78.6 0.643 101.0, 827.0 -1.96
AKR/J f 2739.0 571.0   10 180.0 0.208 1720.0, 3649.0 0.6
BALB/cByJ f 1529.0 850.0   13 236.0 0.556 115.0, 2480.0 -0.72
BTBR T+ Itpr3tf/J f 2794.0 759.0   9 253.0 0.272 1271.0, 4044.0 0.66
C3H/HeJ f 1276.0 415.0   9 138.0 0.326 845.0, 2175.0 -0.99
C57BL/6J f 2425.0 702.0   18 165.0 0.289 575.0, 3654.0 0.25
C57BR/cdJ f 3961.0 851.0   6 347.0 0.215 2892.0, 5313.0 1.92
C57L/J f 2343.0 483.0   7 183.0 0.206 1566.0, 2920.0 0.17
C58/J f 3821.0 1001.0   10 317.0 0.262 1383.0, 4935.0 1.77
CBA/J f 911.0 419.0   14 112.0 0.46 187.0, 1770.0 -1.39
CZECHII/EiJ f 1858.0 456.0   5 204.0 0.245 1438.0, 2526.0 -0.36
DBA/2J f 932.0 657.0   12 190.0 0.705 77.0, 1926.0 -1.37
FVB/NJ f 2485.0 333.0   10 105.0 0.134 2073.0, 3205.0 0.32
I/LnJ f 2868.0 728.0   13 202.0 0.254 1417.0, 4081.0 0.74
KK/HlJ f 1364.0 537.0   9 179.0 0.394 882.0, 2310.0 -0.9
LG/J f 1969.0 724.0   10 229.0 0.368 446.0, 2751.0 -0.24
LP/J f 1329.0 442.0   8 156.0 0.333 1032.0, 2329.0 -0.94
MA/MyJ f 3922.0 978.0   7 370.0 0.249 2777.0, 5831.0 1.88
MOLF/EiJ f 2337.0 950.0   7 359.0 0.407 1352.0, 3975.0 0.16
MRL/MpJ f 1951.0 315.0   10 99.5 0.161 1562.0, 2516.0 -0.26
NOD/ShiLtJ f 3233.0 760.0   11 229.0 0.235 2195.0, 4647.0 1.13
NON/ShiLtJ f 2505.0 544.0   12 157.0 0.217 1728.0, 3416.0 0.34
NOR/LtJ f 2718.0 426.0   10 135.0 0.157 2021.0, 3340.0 0.57
NZO/HlLtJ f 775.0 390.0   7 147.0 0.503 180.0, 1429.0 -1.54
NZW/LacJ f 1498.0 249.0   10 78.6 0.166 994.0, 1877.0 -0.75
PERA/EiJ f 1573.0 449.0   8 159.0 0.286 1082.0, 2340.0 -0.67
P/J f 2321.0 505.0   8 179.0 0.218 1481.0, 2897.0 0.14
PL/J f 2825.0 649.0   9 216.0 0.23 1700.0, 3858.0 0.69
PWD/PhJ f 1851.0 303.0   5 136.0 0.164 1484.0, 2214.0 -0.37
RIIIS/J f 2849.0 452.0   7 171.0 0.159 2330.0, 3388.0 0.72
SEA/GnJ f 1830.0 744.0   7 281.0 0.406 540.0, 2910.0 -0.39
SJL/J f 1735.0 491.0   10 155.0 0.283 970.0, 2370.0 -0.49
SM/J f 2667.0 587.0   9 196.0 0.22 1697.0, 3532.0 0.52
SWR/J f 1942.0 497.0   12 144.0 0.256 1433.0, 3345.0 -0.27
WSB/EiJ f 3571.0 827.0   6 338.0 0.232 2331.0, 4636.0 1.5
ZALENDE/EiJ f 3225.0 551.0   7 208.0 0.171 2649.0, 4152.0 1.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 725.5556 203.7448 1126.4685 324.6426
A/J f 386.9 193.2893 767.2394 6.5606
AKR/J f 2739.1 193.2893 3119.4394 2358.7606
BALB/cByJ f 1528.5385 169.5259 1862.1182 1194.9587
BTBR T+ Itpr3tf/J f 2793.6667 203.7448 3194.5796 2392.7537
C3H/HeJ f 1276.0 203.7448 1676.9129 875.0871
C57BL/6J f 2424.7778 144.0693 2708.266 2141.2895
C57BR/cdJ f 3961.0 249.5354 4452.016 3469.984
C57L/J f 2343.2857 231.0249 2797.8782 1888.6932
C58/J f 3821.0 193.2893 4201.3394 3440.6606
CBA/J f 911.2143 163.3592 1232.6597 589.7688
CZECHII/EiJ f 1858.4 273.3523 2396.2811 1320.5189
DBA/2J f 931.8333 176.4481 1279.0341 584.6326
FVB/NJ f 2485.3 193.2893 2865.6394 2104.9606
I/LnJ f 2868.2308 169.5259 3201.8105 2534.6511
KK/HlJ f 1364.4444 203.7448 1765.3574 963.5315
LG/J f 1968.6 193.2893 2348.9394 1588.2606
LP/J f 1328.875 216.104 1754.1074 903.6426
MA/MyJ f 3922.0 231.0249 4376.5925 3467.4075
MOLF/EiJ f 2337.4286 231.0249 2792.0211 1882.8361
MRL/MpJ f 1950.8 193.2893 2331.1394 1570.4606
NOD/ShiLtJ f 3232.7273 184.2941 3595.3667 2870.0879
NON/ShiLtJ f 2505.0833 176.4481 2852.2841 2157.8826
NOR/LtJ f 2717.9 193.2893 3098.2394 2337.5606
NZO/HlLtJ f 774.5714 231.0249 1229.1639 319.9789
NZW/LacJ f 1498.2 193.2893 1878.5394 1117.8606
PERA/EiJ f 1573.0 216.104 1998.2324 1147.7676
P/J f 2321.0 216.104 2746.2324 1895.7676
PL/J f 2824.6667 203.7448 3225.5796 2423.7537
PWD/PhJ f 1850.6 273.3523 2388.4811 1312.7189
RIIIS/J f 2849.0 231.0249 3303.5925 2394.4075
SEA/GnJ f 1829.5714 231.0249 2284.1639 1374.9789
SJL/J f 1735.4 193.2893 2115.7394 1355.0606
SM/J f 2667.3333 203.7448 3068.2463 2266.4204
SWR/J f 1941.5833 176.4481 2288.7841 1594.3826
WSB/EiJ f 3571.0 249.5354 4062.016 3079.984
ZALENDE/EiJ f 3224.8571 231.0249 3679.4497 2770.2646




  GWAS USING LINEAR MIXED MODELS