Phenotype measure:   HMDPpheno7   aconitate

ID, description, units MPD:50244   aconitate   cis-aconitate (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   101 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno7 - cis-aconitate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested101 strains
Mean of the strain means27199   None
Median of the strain means25783   None
SD of the strain means± 14355
Coefficient of variation (CV)0.528
Min–max range of strain means4090   –   75662   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 8235380452.174 392160973.913 2.3098 0.0145
Residuals 34 5772520443.0403 169780013.0306


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 26009.0 0.0   1   0.0 0.0 26009.0, 26009.0 -0.08
A/J m 60417.0 54969.0   2   38869.0 0.91 21548.0, 99285.0 2.31
AKR/J m 43831.0 0.0   1   0.0 0.0 43831.0, 43831.0 1.16
AXB10/PgnJ m 6686.0 0.0   1   0.0 0.0 6686.0, 6686.0 -1.43
AXB12/PgnJ m 53986.0 0.0   1   0.0 0.0 53986.0, 53986.0 1.87
AXB13/PgnJ m 23376.0 0.0   1   0.0 0.0 23376.0, 23376.0 -0.27
AXB15/PgnJ m 42126.0 0.0   1   0.0 0.0 42126.0, 42126.0 1.04
AXB19a/PgnJ m 24558.0 0.0   1   0.0 0.0 24558.0, 24558.0 -0.18
AXB19b/PgnJ m 44213.0 21158.0   2   14961.0 0.479 29252.0, 59174.0 1.19
AXB19/PgnJ m 51094.0 0.0   1   0.0 0.0 51094.0, 51094.0 1.66
AXB1/PgnJ m 33002.0 0.0   1   0.0 0.0 33002.0, 33002.0 0.4
AXB23/PgnJ m 53181.0 0.0   1   0.0 0.0 53181.0, 53181.0 1.81
AXB24/PgnJ m 30750.0 6642.0   2   4697.0 0.216 26053.0, 35447.0 0.25
AXB2/PgnJ m 29110.0 0.0   1   0.0 0.0 29110.0, 29110.0 0.13
AXB4/PgnJ m 24694.0 0.0   1   0.0 0.0 24694.0, 24694.0 -0.17
AXB5/PgnJ m 25783.0 0.0   1   0.0 0.0 25783.0, 25783.0 -0.1
AXB6/PgnJ m 43569.0 0.0   1   0.0 0.0 43569.0, 43569.0 1.14
AXB8/PgnJ m 12810.0 0.0   1   0.0 0.0 12810.0, 12810.0 -1.0
BALB/cJ m 33726.0 7292.0   3 4210.0 0.216 29199.0, 42138.0 0.45
BTBR T+ Itpr3tf/J m 28364.0 0.0   1   0.0 0.0 28364.0, 28364.0 0.08
BUB/BnJ m 22268.0 0.0   1   0.0 0.0 22268.0, 22268.0 -0.34
BXA11/PgnJ m 31458.0 0.0   1   0.0 0.0 31458.0, 31458.0 0.3
BXA12/PgnJ m 9542.0 0.0   1   0.0 0.0 9542.0, 9542.0 -1.23
BXA13/PgnJ m 20978.0 0.0   1   0.0 0.0 20978.0, 20978.0 -0.43
BXA14/PgnJ m 27676.0 0.0   1   0.0 0.0 27676.0, 27676.0 0.03
BXA16/PgnJ m 21416.0 12509.0   2   8845.0 0.584 12571.0, 30261.0 -0.4
BXA1/PgnJ m 13297.0 0.0   1   0.0 0.0 13297.0, 13297.0 -0.97
BXA24/PgnJ m 14341.0 0.0   1   0.0 0.0 14341.0, 14341.0 -0.9
BXA25/PgnJ m 25783.0 0.0   1   0.0 0.0 25783.0, 25783.0 -0.1
BXA26/PgnJ m 7970.0 0.0   1   0.0 0.0 7970.0, 7970.0 -1.34
BXA2/PgnJ m 26150.0 0.0   1   0.0 0.0 26150.0, 26150.0 -0.07
BXA4/PgnJ m 20546.0 0.0   1   0.0 0.0 20546.0, 20546.0 -0.46
BXA7/PgnJ m 65436.0 0.0   1   0.0 0.0 65436.0, 65436.0 2.66
BXA8/PgnJ m 6418.0 0.0   1   0.0 0.0 6418.0, 6418.0 -1.45
BXD11/TyJ m 14878.0 0.0   1   0.0 0.0 14878.0, 14878.0 -0.86
BXD12/TyJ m 47865.0 0.0   1   0.0 0.0 47865.0, 47865.0 1.44
BXD13/TyJ m 25557.0 0.0   1   0.0 0.0 25557.0, 25557.0 -0.11
BXD14/TyJ m 21003.0 0.0   1   0.0 0.0 21003.0, 21003.0 -0.43
BXD18/TyJ m 27247.0 0.0   1   0.0 0.0 27247.0, 27247.0 0.0
BXD19/TyJ m 7100.0 3868.0   2   2735.0 0.545 4365.0, 9835.0 -1.4
BXD1/TyJ m 49315.0 0.0   1   0.0 0.0 49315.0, 49315.0 1.54
BXD20/TyJ m 31692.0 0.0   1   0.0 0.0 31692.0, 31692.0 0.31
BXD21/TyJ m 36753.0 0.0   1   0.0 0.0 36753.0, 36753.0 0.67
BXD22/TyJ m 24831.0 0.0   1   0.0 0.0 24831.0, 24831.0 -0.16
BXD24/TyJ m 17629.0 0.0   1   0.0 0.0 17629.0, 17629.0 -0.67
BXD24/TyJ-Cep290rd16/J m 4281.0 0.0   1   0.0 0.0 4281.0, 4281.0 -1.6
BXD28/TyJ m 21251.0 7265.0   2   5137.0 0.342 16113.0, 26388.0 -0.41
BXD29-Tlr4lps-2J/J m 25368.0 0.0   1   0.0 0.0 25368.0, 25368.0 -0.13
BXD2/TyJ m 17935.0 0.0   1   0.0 0.0 17935.0, 17935.0 -0.65
BXD32/TyJ m 8226.0 0.0   1   0.0 0.0 8226.0, 8226.0 -1.32
BXD33/TyJ m 19852.0 0.0   1   0.0 0.0 19852.0, 19852.0 -0.51
BXD34/TyJ m 8298.0 0.0   1   0.0 0.0 8298.0, 8298.0 -1.32
BXD38/TyJ m 12405.0 0.0   1   0.0 0.0 12405.0, 12405.0 -1.03
BXD39/TyJ m 28253.0 0.0   1   0.0 0.0 28253.0, 28253.0 0.07
BXD40/TyJ m 13072.0 0.0   1   0.0 0.0 13072.0, 13072.0 -0.98
BXD42/TyJ m 13728.0 0.0   1   0.0 0.0 13728.0, 13728.0 -0.94
BXD5/TyJ m 11023.0 0.0   1   0.0 0.0 11023.0, 11023.0 -1.13
BXD6/TyJ m 21173.0 0.0   1   0.0 0.0 21173.0, 21173.0 -0.42
BXD8/TyJ m 75662.0 0.0   1   0.0 0.0 75662.0, 75662.0 3.38
BXD9/TyJ m 23702.0 0.0   1   0.0 0.0 23702.0, 23702.0 -0.24
BXH19/TyJ m 7297.0 0.0   1   0.0 0.0 7297.0, 7297.0 -1.39
BXH20/KccJ m 30569.0 0.0   1   0.0 0.0 30569.0, 30569.0 0.23
BXH22/KccJ m 31978.0 0.0   1   0.0 0.0 31978.0, 31978.0 0.33
BXH2/TyJ m 28218.0 0.0   1   0.0 0.0 28218.0, 28218.0 0.07
BXH4/TyJ m 23400.0 556.0   2   393.0 0.0238 23006.0, 23793.0 -0.26
BXH7/TyJ m 25783.0 0.0   1   0.0 0.0 25783.0, 25783.0 -0.1
BXH8/TyJ m 18026.0 0.0   1   0.0 0.0 18026.0, 18026.0 -0.64
BXH9/TyJ m 14841.0 0.0   1   0.0 0.0 14841.0, 14841.0 -0.86
C3H/HeJ m 25819.0 282.0   2   200.0 0.0109 25620.0, 26019.0 -0.1
C57BL/6J m 19405.0 9595.0   5 4291.0 0.494 6264.0, 30277.0 -0.54
C57L/J m 4090.0 0.0   1   0.0 0.0 4090.0, 4090.0 -1.61
C58/J m 29419.0 0.0   1   0.0 0.0 29419.0, 29419.0 0.15
CAST/EiJ m 26614.0 0.0   1   0.0 0.0 26614.0, 26614.0 -0.04
CBA/J m 23081.0 0.0   1   0.0 0.0 23081.0, 23081.0 -0.29
CE/J m 18296.0 0.0   1   0.0 0.0 18296.0, 18296.0 -0.62
CXB11/HiAJ m 13945.0 348.0   2   246.0 0.0249 13700.0, 14191.0 -0.92
CXB12/HiAJ m 40364.0 1716.0   2   1213.0 0.0425 39151.0, 41577.0 0.92
CXB13/HiAJ m 11686.0 7227.0   3 4173.0 0.618 5916.0, 19792.0 -1.08
CXB1/ByJ m 21555.0 2770.0   3 1599.0 0.129 18474.0, 23841.0 -0.39
CXB2/ByJ m 28654.0 13720.0   3 7921.0 0.479 12926.0, 38166.0 0.1
CXB3/ByJ m 29879.0 465.0   2   329.0 0.0156 29550.0, 30208.0 0.19
CXB4/ByJ m 16501.0 11279.0   2   7975.0 0.684 8526.0, 24476.0 -0.75
CXB6/ByJ m 26851.0 1134.0   3 655.0 0.0422 25546.0, 27608.0 -0.02
CXB7/ByJ m 55890.0 17230.0   2   12183.0 0.308 43707.0, 68074.0 2.0
CXB8/HiAJ m 27500.0 9734.0   3 5620.0 0.354 18092.0, 37531.0 0.02
CXB9/HiAJ m 36746.0 13864.0   3 8004.0 0.377 21578.0, 48763.0 0.67
DBA/2J m 37252.0 4467.0   4 2234.0 0.12 34404.0, 43916.0 0.7
FVB/NJ m 29274.0 0.0   1   0.0 0.0 29274.0, 29274.0 0.14
I/LnJ m 45404.0 0.0   1   0.0 0.0 45404.0, 45404.0 1.27
KK/HlJ m 30841.0 0.0   1   0.0 0.0 30841.0, 30841.0 0.25
LG/J m 18816.0 0.0   1   0.0 0.0 18816.0, 18816.0 -0.58
LP/J m 27699.0 0.0   1   0.0 0.0 27699.0, 27699.0 0.03
MA/MyJ m 15160.0 0.0   1   0.0 0.0 15160.0, 15160.0 -0.84
NOD/ShiLtJ m 38852.0 0.0   1   0.0 0.0 38852.0, 38852.0 0.81
NON/ShiLtJ m 17321.0 0.0   1   0.0 0.0 17321.0, 17321.0 -0.69
NZW/LacJ m 47225.0 0.0   1   0.0 0.0 47225.0, 47225.0 1.4
PL/J m 21804.0 0.0   1   0.0 0.0 21804.0, 21804.0 -0.38
SEA/GnJ m 43905.0 0.0   1   0.0 0.0 43905.0, 43905.0 1.16
SJL/J m 61114.0 0.0   1   0.0 0.0 61114.0, 61114.0 2.36
SM/J m 45618.0 0.0   1   0.0 0.0 45618.0, 45618.0 1.28
SWR/J m 17750.0 0.0   1   0.0 0.0 17750.0, 17750.0 -0.66


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 60416.55 9213.5773 79140.7919 41692.3081
AXB19b/PgnJ m 44212.6 9213.5773 62936.8419 25488.3581
AXB24/PgnJ m 30749.9 9213.5773 49474.1419 12025.6581
BALB/cJ m 33726.4333 7522.8544 49014.7128 18438.1539
BXA16/PgnJ m 21416.0 9213.5773 40140.2419 2691.7581
BXD19/TyJ m 7099.8 9213.5773 25824.0419 0.0
BXD28/TyJ m 21250.65 9213.5773 39974.8919 2526.4081
BXH4/TyJ m 23399.55 9213.5773 42123.7919 4675.3081
C3H/HeJ m 25819.15 9213.5773 44543.3919 7094.9081
C57BL/6J m 19404.56 5827.1779 31246.8103 7562.3097
CXB11/HiAJ m 13945.45 9213.5773 32669.6919 0.0
CXB12/HiAJ m 40364.1 9213.5773 59088.3419 21639.8581
CXB13/HiAJ m 11685.6333 7522.8544 26973.9128 0.0
CXB1/ByJ m 21555.1333 7522.8544 36843.4128 6266.8539
CXB2/ByJ m 28653.5 7522.8544 43941.7795 13365.2205
CXB3/ByJ m 29879.25 9213.5773 48603.4919 11155.0081
CXB4/ByJ m 16500.9 9213.5773 35225.1419 0.0
CXB6/ByJ m 26850.5333 7522.8544 42138.8128 11562.2539
CXB7/ByJ m 55890.35 9213.5773 74614.5919 37166.1081
CXB8/HiAJ m 27500.3333 7522.8544 42788.6128 12212.0539
CXB9/HiAJ m 36746.0 7522.8544 52034.2795 21457.7205
DBA/2J m 37252.0 6514.983 50492.0384 24011.9616




  GWAS USING LINEAR MIXED MODELS