Project measure / variable:   HMDPpheno6   Trp

ID, description, units MPD:50155   Trp   liver tryptophan (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver tryptophan (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means6821136   None
Median of the strain means6712230   None
SD of the strain means± 1525978
Coefficient of variation (CV)0.224
Min–max range of strain means3114210   –   13200873   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 114360092298634.0 5445718680887.33 8.3841 < 0.0001
Residuals 34 22083873046776.1 649525677846.357


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 6214612.0 0.0   1   0.0 0.0 6214612.0, 6214612.0 -0.4
A/J m 5708510.0 56592.0   2   40016.0 0.00991 5668494.0, 5748526.0 -0.73
AKR/J m 4634411.0 0.0   1   0.0 0.0 4634411.0, 4634411.0 -1.43
AXB10/PgnJ m 6944302.0 0.0   1   0.0 0.0 6944302.0, 6944302.0 0.08
AXB12/PgnJ m 5498624.0 0.0   1   0.0 0.0 5498624.0, 5498624.0 -0.87
AXB13/PgnJ m 6628903.0 0.0   1   0.0 0.0 6628903.0, 6628903.0 -0.13
AXB15/PgnJ m 6986064.0 0.0   1   0.0 0.0 6986064.0, 6986064.0 0.11
AXB19a/PgnJ m 7888226.0 0.0   1   0.0 0.0 7888226.0, 7888226.0 0.7
AXB19b/PgnJ m 10551856.0 2148619.0   2   1519303.0 0.204 9032553.0, 12071159.0 2.44
AXB19/PgnJ m 9551454.0 0.0   1   0.0 0.0 9551454.0, 9551454.0 1.79
AXB1/PgnJ m 6819796.0 0.0   1   0.0 0.0 6819796.0, 6819796.0 0.0
AXB23/PgnJ m 5969308.0 0.0   1   0.0 0.0 5969308.0, 5969308.0 -0.56
AXB24/PgnJ m 5471548.0 1422393.0   2   1005783.0 0.26 4465765.0, 6477332.0 -0.88
AXB2/PgnJ m 5011230.0 0.0   1   0.0 0.0 5011230.0, 5011230.0 -1.19
AXB4/PgnJ m 8574814.0 0.0   1   0.0 0.0 8574814.0, 8574814.0 1.15
AXB5/PgnJ m 4711682.0 0.0   1   0.0 0.0 4711682.0, 4711682.0 -1.38
AXB6/PgnJ m 8218965.0 0.0   1   0.0 0.0 8218965.0, 8218965.0 0.92
AXB8/PgnJ m 6638248.0 0.0   1   0.0 0.0 6638248.0, 6638248.0 -0.12
BALB/cJ m 6181584.0 291380.0   3 168229.0 0.0471 5880624.0, 6462333.0 -0.42
BTBR T+ Itpr3tf/J m 5480492.0 0.0   1   0.0 0.0 5480492.0, 5480492.0 -0.88
BUB/BnJ m 7622054.0 0.0   1   0.0 0.0 7622054.0, 7622054.0 0.52
BXA11/PgnJ m 5708360.0 0.0   1   0.0 0.0 5708360.0, 5708360.0 -0.73
BXA12/PgnJ m 3114210.0 0.0   1   0.0 0.0 3114210.0, 3114210.0 -2.43
BXA13/PgnJ m 7968258.0 0.0   1   0.0 0.0 7968258.0, 7968258.0 0.75
BXA14/PgnJ m 10613966.0 0.0   1   0.0 0.0 10613966.0, 10613966.0 2.49
BXA16/PgnJ m 5781848.0 1125984.0   2   796191.0 0.195 4985656.0, 6578039.0 -0.68
BXA1/PgnJ m 7259754.0 0.0   1   0.0 0.0 7259754.0, 7259754.0 0.29
BXA24/PgnJ m 8426401.0 0.0   1   0.0 0.0 8426401.0, 8426401.0 1.05
BXA25/PgnJ m 5088772.0 0.0   1   0.0 0.0 5088772.0, 5088772.0 -1.14
BXA26/PgnJ m 6862804.0 0.0   1   0.0 0.0 6862804.0, 6862804.0 0.03
BXA2/PgnJ m 7916318.0 0.0   1   0.0 0.0 7916318.0, 7916318.0 0.72
BXA4/PgnJ m 5401897.0 0.0   1   0.0 0.0 5401897.0, 5401897.0 -0.93
BXA7/PgnJ m 8124947.0 0.0   1   0.0 0.0 8124947.0, 8124947.0 0.85
BXA8/PgnJ m 5999653.0 0.0   1   0.0 0.0 5999653.0, 5999653.0 -0.54
BXD11/TyJ m 5026919.0 0.0   1   0.0 0.0 5026919.0, 5026919.0 -1.18
BXD12/TyJ m 8479280.0 0.0   1   0.0 0.0 8479280.0, 8479280.0 1.09
BXD13/TyJ m 6795170.0 0.0   1   0.0 0.0 6795170.0, 6795170.0 -0.02
BXD14/TyJ m 8240718.0 0.0   1   0.0 0.0 8240718.0, 8240718.0 0.93
BXD15/TyJ m 7263024.0 0.0   1   0.0 0.0 7263024.0, 7263024.0 0.29
BXD18/TyJ m 4944036.0 0.0   1   0.0 0.0 4944036.0, 4944036.0 -1.23
BXD19/TyJ m 5614800.0 387763.0   2   274190.0 0.0691 5340611.0, 5888990.0 -0.79
BXD1/TyJ m 5972094.0 0.0   1   0.0 0.0 5972094.0, 5972094.0 -0.56
BXD20/TyJ m 6092226.0 0.0   1   0.0 0.0 6092226.0, 6092226.0 -0.48
BXD21/TyJ m 4914690.0 0.0   1   0.0 0.0 4914690.0, 4914690.0 -1.25
BXD22/TyJ m 9321542.0 0.0   1   0.0 0.0 9321542.0, 9321542.0 1.64
BXD24/TyJ m 5708638.0 0.0   1   0.0 0.0 5708638.0, 5708638.0 -0.73
BXD24/TyJ-Cep290rd16/J m 5504740.0 0.0   1   0.0 0.0 5504740.0, 5504740.0 -0.86
BXD28/TyJ m 7053915.0 1426231.0   2   1008498.0 0.202 6045418.0, 8062413.0 0.15
BXD29-Tlr4lps-2J/J m 7333273.0 0.0   1   0.0 0.0 7333273.0, 7333273.0 0.34
BXD2/TyJ m 7583036.0 0.0   1   0.0 0.0 7583036.0, 7583036.0 0.5
BXD32/TyJ m 7567090.0 0.0   1   0.0 0.0 7567090.0, 7567090.0 0.49
BXD33/TyJ m 7820164.0 0.0   1   0.0 0.0 7820164.0, 7820164.0 0.65
BXD34/TyJ m 7228143.0 0.0   1   0.0 0.0 7228143.0, 7228143.0 0.27
BXD36/TyJ m 5158315.0 0.0   1   0.0 0.0 5158315.0, 5158315.0 -1.09
BXD38/TyJ m 4783758.0 0.0   1   0.0 0.0 4783758.0, 4783758.0 -1.34
BXD39/TyJ m 7380164.0 0.0   1   0.0 0.0 7380164.0, 7380164.0 0.37
BXD40/TyJ m 6158593.0 0.0   1   0.0 0.0 6158593.0, 6158593.0 -0.43
BXD42/TyJ m 5915748.0 0.0   1   0.0 0.0 5915748.0, 5915748.0 -0.59
BXD5/TyJ m 8676508.0 0.0   1   0.0 0.0 8676508.0, 8676508.0 1.22
BXD6/TyJ m 6137184.0 0.0   1   0.0 0.0 6137184.0, 6137184.0 -0.45
BXD8/TyJ m 5110644.0 0.0   1   0.0 0.0 5110644.0, 5110644.0 -1.12
BXD9/TyJ m 6905842.0 0.0   1   0.0 0.0 6905842.0, 6905842.0 0.06
BXH10/TyJ m 7645893.0 0.0   1   0.0 0.0 7645893.0, 7645893.0 0.54
BXH19/TyJ m 6450706.0 0.0   1   0.0 0.0 6450706.0, 6450706.0 -0.24
BXH20/KccJ m 8166864.0 0.0   1   0.0 0.0 8166864.0, 8166864.0 0.88
BXH22/KccJ m 6959580.0 0.0   1   0.0 0.0 6959580.0, 6959580.0 0.09
BXH2/TyJ m 7549362.0 0.0   1   0.0 0.0 7549362.0, 7549362.0 0.48
BXH4/TyJ m 7562083.0 415148.0   2   293554.0 0.0549 7268529.0, 7855638.0 0.49
BXH6/TyJ m 8323757.0 0.0   1   0.0 0.0 8323757.0, 8323757.0 0.98
BXH7/TyJ m 6259407.0 0.0   1   0.0 0.0 6259407.0, 6259407.0 -0.37
BXH8/TyJ m 8070034.0 0.0   1   0.0 0.0 8070034.0, 8070034.0 0.82
BXH9/TyJ m 6436624.0 0.0   1   0.0 0.0 6436624.0, 6436624.0 -0.25
C3H/HeJ m 7126125.0 503605.0   2   356102.0 0.0707 6770022.0, 7482228.0 0.2
C57BL/6J m 8663852.0 578468.0   5 258699.0 0.0668 7909276.0, 9455085.0 1.21
C57L/J m 3523870.0 0.0   1   0.0 0.0 3523870.0, 3523870.0 -2.16
C58/J m 13200873.0 0.0   1   0.0 0.0 13200873.0, 13200873.0 4.18
CAST/EiJ m 7180405.0 0.0   1   0.0 0.0 7180405.0, 7180405.0 0.24
CBA/J m 5618368.0 0.0   1   0.0 0.0 5618368.0, 5618368.0 -0.79
CE/J m 6655388.0 0.0   1   0.0 0.0 6655388.0, 6655388.0 -0.11
CXB11/HiAJ m 5864190.0 215903.0   2   152666.0 0.0368 5711524.0, 6016857.0 -0.63
CXB12/HiAJ m 8518756.0 812827.0   2   574756.0 0.0954 7944000.0, 9093511.0 1.11
CXB13/HiAJ m 8616225.0 103365.0   3 59678.0 0.012 8498001.0, 8689538.0 1.18
CXB1/ByJ m 6715333.0 1147414.0   3 662460.0 0.171 5758915.0, 7987588.0 -0.07
CXB2/ByJ m 7509653.0 244960.0   3 141428.0 0.0326 7226918.0, 7658184.0 0.45
CXB3/ByJ m 7398301.0 886994.0   2   627200.0 0.12 6771101.0, 8025500.0 0.38
CXB4/ByJ m 7466510.0 1208784.0   2   854739.0 0.162 6611770.0, 8321249.0 0.42
CXB6/ByJ m 6696166.0 706113.0   3 407675.0 0.105 5927885.0, 7316746.0 -0.08
CXB7/ByJ m 7464825.0 636478.0   2   450058.0 0.0853 7014766.0, 7914883.0 0.42
CXB8/HiAJ m 10420490.0 993061.0   3 573344.0 0.0953 9276369.0, 11058961.0 2.36
CXB9/HiAJ m 7825088.0 303807.0   3 175403.0 0.0388 7536349.0, 8142001.0 0.66
DBA/2J m 5488344.0 505090.0   4 252545.0 0.092 4907168.0, 6092190.0 -0.87
FVB/NJ m 5676031.0 0.0   1   0.0 0.0 5676031.0, 5676031.0 -0.75
I/LnJ m 6267846.0 0.0   1   0.0 0.0 6267846.0, 6267846.0 -0.36
KK/HlJ m 5804918.0 0.0   1   0.0 0.0 5804918.0, 5804918.0 -0.67
LG/J m 5339810.0 0.0   1   0.0 0.0 5339810.0, 5339810.0 -0.97
LP/J m 6296756.0 0.0   1   0.0 0.0 6296756.0, 6296756.0 -0.34
MA/MyJ m 5106492.0 0.0   1   0.0 0.0 5106492.0, 5106492.0 -1.12
NOD/ShiLtJ m 7085280.0 0.0   1   0.0 0.0 7085280.0, 7085280.0 0.17
NON/ShiLtJ m 6130560.0 0.0   1   0.0 0.0 6130560.0, 6130560.0 -0.45
NZW/LacJ m 5806407.0 0.0   1   0.0 0.0 5806407.0, 5806407.0 -0.66
PL/J m 8333464.0 0.0   1   0.0 0.0 8333464.0, 8333464.0 0.99
RIIIS/J m 5761202.0 0.0   1   0.0 0.0 5761202.0, 5761202.0 -0.69
SEA/GnJ m 6709126.0 0.0   1   0.0 0.0 6709126.0, 6709126.0 -0.07
SJL/J m 4901388.0 0.0   1   0.0 0.0 4901388.0, 4901388.0 -1.26
SM/J m 6292944.0 0.0   1   0.0 0.0 6292944.0, 6292944.0 -0.35
SWR/J m 7886964.0 0.0   1   0.0 0.0 7886964.0, 7886964.0 0.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 5708510.25 569879.6706 6866645.0815 4550375.4185
AXB19b/PgnJ m 10551856.0 569879.6706 11709990.8315 9393721.1685
AXB24/PgnJ m 5471548.5 569879.6706 6629683.3315 4313413.6685
BALB/cJ m 6181584.1667 465304.8026 7127197.2968 5235971.0365
BXA16/PgnJ m 5781847.75 569879.6706 6939982.5815 4623712.9185
BXD19/TyJ m 5614800.5 569879.6706 6772935.3315 4456665.6685
BXD28/TyJ m 7053915.25 569879.6706 8212050.0815 5895780.4185
BXH4/TyJ m 7562083.25 569879.6706 8720218.0815 6403948.4185
C3H/HeJ m 7126125.0 569879.6706 8284259.8315 5967990.1685
C57BL/6J m 8663852.5 360423.5502 9396321.281 7931383.719
CXB11/HiAJ m 5864190.5 569879.6706 7022325.3315 4706055.6685
CXB12/HiAJ m 8518755.5 569879.6706 9676890.3315 7360620.6685
CXB13/HiAJ m 8616225.3333 465304.8026 9561838.4635 7670612.2032
CXB1/ByJ m 6715332.8333 465304.8026 7660945.9635 5769719.7032
CXB2/ByJ m 7509652.8333 465304.8026 8455265.9635 6564039.7032
CXB3/ByJ m 7398300.75 569879.6706 8556435.5815 6240165.9185
CXB4/ByJ m 7466509.75 569879.6706 8624644.5815 6308374.9185
CXB6/ByJ m 6696165.6667 465304.8026 7641778.7968 5750552.5365
CXB7/ByJ m 7464824.75 569879.6706 8622959.5815 6306689.9185
CXB8/HiAJ m 10420489.6667 465304.8026 11366102.7968 9474876.5365
CXB9/HiAJ m 7825088.5 465304.8026 8770701.6302 6879475.3698
DBA/2J m 5488344.375 402965.7795 6307269.3679 4669419.3821




  GWAS USING LINEAR MIXED MODELS