Project measure / variable:   HMDPpheno6   betaine_aldehyde

ID, description, units MPD:50134   betaine_aldehyde   liver betaine aldehyde (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver betaine aldehyde (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1622264   None
Median of the strain means1616183   None
SD of the strain means± 312317
Coefficient of variation (CV)0.193
Min–max range of strain means803377   –   2303166   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 4448257045962.46 211821764093.451 2.3942 0.0114
Residuals 34 3008122547882.07 88474192584.7668


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1657520.0 0.0   1   0.0 0.0 1657520.0, 1657520.0 0.11
A/J m 1469701.0 26344.0   2   18628.0 0.0179 1451073.0, 1488329.0 -0.49
AKR/J m 1511462.0 0.0   1   0.0 0.0 1511462.0, 1511462.0 -0.35
AXB10/PgnJ m 1658904.0 0.0   1   0.0 0.0 1658904.0, 1658904.0 0.12
AXB12/PgnJ m 1736103.0 0.0   1   0.0 0.0 1736103.0, 1736103.0 0.36
AXB13/PgnJ m 1582976.0 0.0   1   0.0 0.0 1582976.0, 1582976.0 -0.13
AXB15/PgnJ m 1909486.0 0.0   1   0.0 0.0 1909486.0, 1909486.0 0.92
AXB19a/PgnJ m 1603272.0 0.0   1   0.0 0.0 1603272.0, 1603272.0 -0.06
AXB19b/PgnJ m 1679372.0 85663.0   2   60573.0 0.051 1618799.0, 1739945.0 0.18
AXB19/PgnJ m 2172573.0 0.0   1   0.0 0.0 2172573.0, 2172573.0 1.76
AXB1/PgnJ m 2079316.0 0.0   1   0.0 0.0 2079316.0, 2079316.0 1.46
AXB23/PgnJ m 1527430.0 0.0   1   0.0 0.0 1527430.0, 1527430.0 -0.3
AXB24/PgnJ m 1634517.0 507371.0   2   358766.0 0.31 1275751.0, 1993283.0 0.04
AXB2/PgnJ m 1322409.0 0.0   1   0.0 0.0 1322409.0, 1322409.0 -0.96
AXB4/PgnJ m 1758278.0 0.0   1   0.0 0.0 1758278.0, 1758278.0 0.44
AXB5/PgnJ m 1112264.0 0.0   1   0.0 0.0 1112264.0, 1112264.0 -1.63
AXB6/PgnJ m 1617884.0 0.0   1   0.0 0.0 1617884.0, 1617884.0 -0.01
AXB8/PgnJ m 1542023.0 0.0   1   0.0 0.0 1542023.0, 1542023.0 -0.26
BALB/cJ m 1652887.0 350354.0   3 202277.0 0.212 1446592.0, 2057414.0 0.1
BTBR T+ Itpr3tf/J m 1557028.0 0.0   1   0.0 0.0 1557028.0, 1557028.0 -0.21
BUB/BnJ m 1776974.0 0.0   1   0.0 0.0 1776974.0, 1776974.0 0.5
BXA11/PgnJ m 1925571.0 0.0   1   0.0 0.0 1925571.0, 1925571.0 0.97
BXA12/PgnJ m 1889829.0 0.0   1   0.0 0.0 1889829.0, 1889829.0 0.86
BXA13/PgnJ m 2070593.0 0.0   1   0.0 0.0 2070593.0, 2070593.0 1.44
BXA14/PgnJ m 1581113.0 0.0   1   0.0 0.0 1581113.0, 1581113.0 -0.13
BXA16/PgnJ m 1410361.0 344100.0   2   243316.0 0.244 1167045.0, 1653677.0 -0.68
BXA1/PgnJ m 1924577.0 0.0   1   0.0 0.0 1924577.0, 1924577.0 0.97
BXA24/PgnJ m 1881333.0 0.0   1   0.0 0.0 1881333.0, 1881333.0 0.83
BXA25/PgnJ m 1352474.0 0.0   1   0.0 0.0 1352474.0, 1352474.0 -0.86
BXA26/PgnJ m 1363860.0 0.0   1   0.0 0.0 1363860.0, 1363860.0 -0.83
BXA2/PgnJ m 1946284.0 0.0   1   0.0 0.0 1946284.0, 1946284.0 1.04
BXA4/PgnJ m 1496804.0 0.0   1   0.0 0.0 1496804.0, 1496804.0 -0.4
BXA7/PgnJ m 1111703.0 0.0   1   0.0 0.0 1111703.0, 1111703.0 -1.63
BXA8/PgnJ m 1495398.0 0.0   1   0.0 0.0 1495398.0, 1495398.0 -0.41
BXD11/TyJ m 1885262.0 0.0   1   0.0 0.0 1885262.0, 1885262.0 0.84
BXD12/TyJ m 1968665.0 0.0   1   0.0 0.0 1968665.0, 1968665.0 1.11
BXD13/TyJ m 1424860.0 0.0   1   0.0 0.0 1424860.0, 1424860.0 -0.63
BXD14/TyJ m 1954822.0 0.0   1   0.0 0.0 1954822.0, 1954822.0 1.06
BXD15/TyJ m 1973445.0 0.0   1   0.0 0.0 1973445.0, 1973445.0 1.12
BXD18/TyJ m 891638.0 0.0   1   0.0 0.0 891638.0, 891638.0 -2.34
BXD19/TyJ m 1724019.0 46969.0   2   33212.0 0.0272 1690807.0, 1757231.0 0.33
BXD1/TyJ m 1694502.0 0.0   1   0.0 0.0 1694502.0, 1694502.0 0.23
BXD20/TyJ m 1480933.0 0.0   1   0.0 0.0 1480933.0, 1480933.0 -0.45
BXD21/TyJ m 1132990.0 0.0   1   0.0 0.0 1132990.0, 1132990.0 -1.57
BXD22/TyJ m 2011465.0 0.0   1   0.0 0.0 2011465.0, 2011465.0 1.25
BXD24/TyJ m 1536874.0 0.0   1   0.0 0.0 1536874.0, 1536874.0 -0.27
BXD24/TyJ-Cep290rd16/J m 1906314.0 0.0   1   0.0 0.0 1906314.0, 1906314.0 0.91
BXD28/TyJ m 2040302.0 98693.0   2   69787.0 0.0484 1970515.0, 2110089.0 1.34
BXD29-Tlr4lps-2J/J m 1525495.0 0.0   1   0.0 0.0 1525495.0, 1525495.0 -0.31
BXD2/TyJ m 1223601.0 0.0   1   0.0 0.0 1223601.0, 1223601.0 -1.28
BXD32/TyJ m 1275301.0 0.0   1   0.0 0.0 1275301.0, 1275301.0 -1.11
BXD33/TyJ m 1511364.0 0.0   1   0.0 0.0 1511364.0, 1511364.0 -0.36
BXD34/TyJ m 1697492.0 0.0   1   0.0 0.0 1697492.0, 1697492.0 0.24
BXD36/TyJ m 1742997.0 0.0   1   0.0 0.0 1742997.0, 1742997.0 0.39
BXD38/TyJ m 1614482.0 0.0   1   0.0 0.0 1614482.0, 1614482.0 -0.02
BXD39/TyJ m 1237550.0 0.0   1   0.0 0.0 1237550.0, 1237550.0 -1.23
BXD40/TyJ m 1622207.0 0.0   1   0.0 0.0 1622207.0, 1622207.0 0.0
BXD42/TyJ m 1295690.0 0.0   1   0.0 0.0 1295690.0, 1295690.0 -1.05
BXD5/TyJ m 1749512.0 0.0   1   0.0 0.0 1749512.0, 1749512.0 0.41
BXD6/TyJ m 1843008.0 0.0   1   0.0 0.0 1843008.0, 1843008.0 0.71
BXD8/TyJ m 1082432.0 0.0   1   0.0 0.0 1082432.0, 1082432.0 -1.73
BXD9/TyJ m 1630422.0 0.0   1   0.0 0.0 1630422.0, 1630422.0 0.03
BXH10/TyJ m 2151875.0 0.0   1   0.0 0.0 2151875.0, 2151875.0 1.7
BXH19/TyJ m 1250781.0 0.0   1   0.0 0.0 1250781.0, 1250781.0 -1.19
BXH20/KccJ m 2032663.0 0.0   1   0.0 0.0 2032663.0, 2032663.0 1.31
BXH22/KccJ m 2303166.0 0.0   1   0.0 0.0 2303166.0, 2303166.0 2.18
BXH2/TyJ m 1820774.0 0.0   1   0.0 0.0 1820774.0, 1820774.0 0.64
BXH4/TyJ m 2080144.0 92865.0   2   65666.0 0.0446 2014479.0, 2145810.0 1.47
BXH6/TyJ m 1746506.0 0.0   1   0.0 0.0 1746506.0, 1746506.0 0.4
BXH7/TyJ m 2188876.0 0.0   1   0.0 0.0 2188876.0, 2188876.0 1.81
BXH8/TyJ m 2038200.0 0.0   1   0.0 0.0 2038200.0, 2038200.0 1.33
BXH9/TyJ m 1929273.0 0.0   1   0.0 0.0 1929273.0, 1929273.0 0.98
C3H/HeJ m 1210631.0 398994.0   2   282131.0 0.33 928500.0, 1492762.0 -1.32
C57BL/6J m 1586837.0 237624.0   5 106269.0 0.15 1295397.0, 1920004.0 -0.11
C57L/J m 1494417.0 0.0   1   0.0 0.0 1494417.0, 1494417.0 -0.41
C58/J m 1601318.0 0.0   1   0.0 0.0 1601318.0, 1601318.0 -0.07
CAST/EiJ m 1314661.0 0.0   1   0.0 0.0 1314661.0, 1314661.0 -0.98
CBA/J m 1835071.0 0.0   1   0.0 0.0 1835071.0, 1835071.0 0.68
CE/J m 1384630.0 0.0   1   0.0 0.0 1384630.0, 1384630.0 -0.76
CXB11/HiAJ m 1407817.0 85969.0   2   60789.0 0.0611 1347028.0, 1468606.0 -0.69
CXB12/HiAJ m 803377.0 62693.0   2   44331.0 0.078 759046.0, 847708.0 -2.62
CXB13/HiAJ m 1502144.0 780505.0   3 450625.0 0.52 877986.0, 2377258.0 -0.38
CXB1/ByJ m 1440569.0 102639.0   3 59259.0 0.0712 1378268.0, 1559033.0 -0.58
CXB2/ByJ m 1491643.0 133993.0   3 77361.0 0.0898 1340990.0, 1597495.0 -0.42
CXB3/ByJ m 1090435.0 5620.0   2   3974.0 0.00515 1086461.0, 1094409.0 -1.7
CXB4/ByJ m 1191381.0 153143.0   2   108288.0 0.129 1083093.0, 1299669.0 -1.38
CXB6/ByJ m 1169639.0 196000.0   3 113161.0 0.168 943781.0, 1295112.0 -1.45
CXB7/ByJ m 1291533.0 234444.0   2   165777.0 0.182 1125757.0, 1457310.0 -1.06
CXB8/HiAJ m 1338003.0 110765.0   3 63950.0 0.0828 1211086.0, 1415175.0 -0.91
CXB9/HiAJ m 953531.0 487573.0   3 281500.0 0.511 390735.0, 1248064.0 -2.14
DBA/2J m 1440887.0 101960.0   4 50980.0 0.0708 1342185.0, 1583118.0 -0.58
FVB/NJ m 1630372.0 0.0   1   0.0 0.0 1630372.0, 1630372.0 0.03
I/LnJ m 1731284.0 0.0   1   0.0 0.0 1731284.0, 1731284.0 0.35
KK/HlJ m 1529660.0 0.0   1   0.0 0.0 1529660.0, 1529660.0 -0.3
LG/J m 2208976.0 0.0   1   0.0 0.0 2208976.0, 2208976.0 1.88
LP/J m 2236859.0 0.0   1   0.0 0.0 2236859.0, 2236859.0 1.97
MA/MyJ m 1495122.0 0.0   1   0.0 0.0 1495122.0, 1495122.0 -0.41
NOD/ShiLtJ m 1612716.0 0.0   1   0.0 0.0 1612716.0, 1612716.0 -0.03
NON/ShiLtJ m 1486935.0 0.0   1   0.0 0.0 1486935.0, 1486935.0 -0.43
NZW/LacJ m 1980680.0 0.0   1   0.0 0.0 1980680.0, 1980680.0 1.15
PL/J m 1852776.0 0.0   1   0.0 0.0 1852776.0, 1852776.0 0.74
RIIIS/J m 1745036.0 0.0   1   0.0 0.0 1745036.0, 1745036.0 0.39
SEA/GnJ m 1661197.0 0.0   1   0.0 0.0 1661197.0, 1661197.0 0.12
SJL/J m 1813192.0 0.0   1   0.0 0.0 1813192.0, 1813192.0 0.61
SM/J m 1718029.0 0.0   1   0.0 0.0 1718029.0, 1718029.0 0.31
SWR/J m 1476419.0 0.0   1   0.0 0.0 1476419.0, 1476419.0 -0.47


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1469700.9 210326.1664 1897135.0969 1042266.7031
AXB19b/PgnJ m 1679371.95 210326.1664 2106806.1469 1251937.7531
AXB24/PgnJ m 1634517.2 210326.1664 2061951.3969 1207083.0031
BALB/cJ m 1652886.9667 171730.5958 2001885.527 1303888.4063
BXA16/PgnJ m 1410361.05 210326.1664 1837795.2469 982926.8531
BXD19/TyJ m 1724019.05 210326.1664 2151453.2469 1296584.8531
BXD28/TyJ m 2040302.2 210326.1664 2467736.3969 1612868.0031
BXH4/TyJ m 2080144.3 210326.1664 2507578.4969 1652710.1031
C3H/HeJ m 1210630.9 210326.1664 1638065.0969 783196.7031
C57BL/6J m 1586837.46 133021.9475 1857170.5824 1316504.3376
CXB11/HiAJ m 1407817.45 210326.1664 1835251.6469 980383.2531
CXB12/HiAJ m 803377.15 210326.1664 1230811.3469 375942.9531
CXB13/HiAJ m 1502143.9 171730.5958 1851142.4604 1153145.3396
CXB1/ByJ m 1440568.8667 171730.5958 1789567.427 1091570.3063
CXB2/ByJ m 1491642.5333 171730.5958 1840641.0937 1142643.973
CXB3/ByJ m 1090435.1 210326.1664 1517869.2969 663000.9031
CXB4/ByJ m 1191380.8 210326.1664 1618814.9969 763946.6031
CXB6/ByJ m 1169638.5333 171730.5958 1518637.0937 820639.973
CXB7/ByJ m 1291533.25 210326.1664 1718967.4469 864099.0531
CXB8/HiAJ m 1338003.0667 171730.5958 1687001.627 989004.5063
CXB9/HiAJ m 953531.3333 171730.5958 1302529.8937 604532.773
DBA/2J m 1440886.75 148723.0586 1743128.3692 1138645.1308




  GWAS USING LINEAR MIXED MODELS