Project measure / variable:   Schughart2   pctbw_d7

ID, description, units MPD:49604   pctbw_d7   body weight as percent of baseline   [%]  post-infection day 7  
influenza A (H1N1) virus study
Data set, strains Schughart2   BXD w/par   56 strains     sex: f     age: 9-18wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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Schughart2 - body weight as percent of baseline post-infection day 7



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested56 strains
Mean of the strain means80.5   %
Median of the strain means79.6   %
SD of the strain means± 5.68
Coefficient of variation (CV)0.0705
Min–max range of strain means75.0   –   98.4   %
Mean sample size per strain6.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 55 11012.3979 200.2254 10.1278 < 0.0001
Residuals 355 7018.3414 19.77


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 82.9 7.54   29 1.4 0.0909 75.0, 103.0 0.42
BXD100/RwwJ f 79.0 2.72   5 1.22 0.0344 75.8, 82.3 -0.27
BXD102/RwwJ f 76.5 2.29   5 1.02 0.0299 75.0, 80.5 -0.71
BXD11/TyJ f 84.6 3.28   8 1.16 0.0387 79.2, 89.2 0.72
BXD12/TyJ f 75.0 0.0   3 0.0 0.0 75.0, 75.0 -0.97
BXD13/TyJ f 92.8 6.91   6 2.82 0.0745 80.5, 99.7 2.17
BXD14/TyJ f 75.3 0.76   5 0.34 0.0101 75.0, 76.7 -0.92
BXD15/TyJ f 75.0 0.0   5 0.0 0.0 75.0, 75.0 -0.97
BXD16/TyJ f 77.1 2.42   5 1.08 0.0314 75.0, 80.9 -0.6
BXD18/TyJ f 75.0 0.0   5 0.0 0.0 75.0, 75.0 -0.97
BXD19/TyJ f 79.6 4.48   5 2.0 0.0562 75.0, 86.8 -0.16
BXD1/TyJ f 84.6 3.39   5 1.51 0.04 79.5, 87.7 0.72
BXD20/TyJ f 83.8 6.58   5 2.94 0.0786 76.3, 90.5 0.58
BXD21/TyJ f 80.2 4.09   4 2.04 0.051 76.6, 85.4 -0.05
BXD23/TyJ f 82.9 5.24   9 1.75 0.0631 75.1, 91.1 0.42
BXD28/TyJ f 75.0 0.0   4 0.0 0.0 75.0, 75.0 -0.97
BXD2/TyJ f 81.8 6.61   5 2.96 0.0808 75.0, 89.4 0.23
BXD31/TyJ f 75.4 0.945   7 0.357 0.0125 75.0, 77.5 -0.9
BXD32/TyJ f 78.7 2.47   7 0.933 0.0313 75.4, 82.2 -0.32
BXD34/TyJ f 75.0 0.0   3 0.0 0.0 75.0, 75.0 -0.97
BXD36/TyJ f 75.0 0.0   5 0.0 0.0 75.0, 75.0 -0.97
BXD38/TyJ f 75.0 0.0   5 0.0 0.0 75.0, 75.0 -0.97
BXD39/TyJ f 87.1 7.05   8 2.49 0.081 78.3, 97.9 1.16
BXD40/TyJ f 76.4 1.95   12 0.562 0.0255 75.0, 80.0 -0.72
BXD42/TyJ f 84.6 7.94   4 3.97 0.0938 75.0, 93.8 0.72
BXD43/RwwJ f 93.1 7.95   7 3.0 0.0854 80.4, 103.0 2.22
BXD44/RwwJ f 75.0 0.0894   5 0.04 0.00119 75.0, 75.2 -0.97
BXD48a/RwwJ f 81.4 4.45   4 2.22 0.0546 77.0, 85.5 0.16
BXD51/RwwJ f 75.3 0.776   6 0.317 0.0103 75.0, 76.9 -0.92
BXD55/RwwJ f 79.2 0.507   5 0.227 0.0064 78.5, 79.8 -0.23
BXD56/RwwJ f 76.7 3.89   5 1.74 0.0507 75.0, 83.7 -0.67
BXD5/TyJ f 81.7 4.59   4 2.3 0.0562 75.0, 85.4 0.21
BXD60/RwwJ f 78.3 2.93   5 1.31 0.0375 75.0, 81.2 -0.39
BXD61/RwwJ f 81.5 3.52   6 1.44 0.0431 75.9, 84.8 0.18
BXD62/RwwJ f 75.4 0.85   5 0.38 0.0113 75.0, 76.9 -0.9
BXD65a/RwwJ f 94.9 8.18   4 4.09 0.0861 83.4, 101.0 2.53
BXD65b/RwwJ f 83.7 2.39   5 1.07 0.0286 79.6, 85.7 0.56
BXD65/RwwJ f 82.1 6.37   8 2.25 0.0775 75.1, 91.2 0.28
BXD67/RwwJ f 82.3 4.39   5 1.96 0.0533 78.0, 89.0 0.32
BXD69/RwwJ f 80.2 2.8   5 1.25 0.035 75.4, 82.2 -0.05
BXD70/RwwJ f 75.0 0.0   5 0.0 0.0 75.0, 75.0 -0.97
BXD71/RwwJ f 79.6 2.95   5 1.32 0.0371 76.5, 83.5 -0.16
BXD73a/RwwJ f 75.0 0.0   4 0.0 0.0 75.0, 75.0 -0.97
BXD73b/RwwJ f 75.0 0.0   5 0.0 0.0 75.0, 75.0 -0.97
BXD73/RwwJ f 76.7 2.35   5 1.05 0.0307 75.0, 79.9 -0.67
BXD74/RwwJ f 75.6 0.926   5 0.414 0.0122 75.0, 77.2 -0.86
BXD75/RwwJ f 83.4 4.78   4 2.39 0.0573 77.8, 88.6 0.51
BXD79/RwwJ f 85.9 3.64   5 1.63 0.0423 81.2, 89.4 0.95
BXD84/RwwJ f 81.4 3.74   5 1.67 0.0459 75.8, 85.4 0.16
BXD87/RwwJ f 81.2 1.82   5 0.813 0.0224 79.1, 83.2 0.12
BXD89/RwwJ f 75.0 0.0   4 0.0 0.0 75.0, 75.0 -0.97
BXD8/TyJ f 88.2 5.41   8 1.91 0.0614 80.5, 97.9 1.36
BXD98/RwwJ f 90.0 3.3   4 1.65 0.0367 85.2, 92.6 1.67
BXD9/TyJ f 98.4 3.17   5 1.42 0.0322 93.8, 102.0 3.15
C57BL/6J f 83.1 5.18   39 0.829 0.0623 75.0, 105.0 0.46
DBA/2J f 75.7 3.79   60 0.489 0.05 75.0, 103.0 -0.85


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 82.8724 0.8257 84.4962 81.2486
BXD100/RwwJ f 78.98 1.9885 82.8907 75.0693
BXD102/RwwJ f 76.52 1.9885 80.4307 72.6093
BXD11/TyJ f 84.6 1.572 87.6916 81.5084
BXD12/TyJ f 75.0 2.5671 80.0486 69.9514
BXD13/TyJ f 92.7667 1.8152 96.3366 89.1967
BXD14/TyJ f 75.34 1.9885 79.2507 71.4293
BXD15/TyJ f 75.0 1.9885 78.9107 71.0893
BXD16/TyJ f 77.1 1.9885 81.0107 73.1893
BXD18/TyJ f 75.0 1.9885 78.9107 71.0893
BXD19/TyJ f 79.62 1.9885 83.5307 75.7093
BXD1/TyJ f 84.6 1.9885 88.5107 80.6893
BXD20/TyJ f 83.82 1.9885 87.7307 79.9093
BXD21/TyJ f 80.2 2.2232 84.5722 75.8278
BXD23/TyJ f 82.9333 1.4821 85.8482 80.0185
BXD28/TyJ f 75.0 2.2232 79.3722 70.6278
BXD2/TyJ f 81.8 1.9885 85.7107 77.8893
BXD31/TyJ f 75.3571 1.6806 78.6622 72.052
BXD32/TyJ f 78.7429 1.6806 82.048 75.4378
BXD34/TyJ f 75.0 2.5671 80.0486 69.9514
BXD36/TyJ f 75.0 1.9885 78.9107 71.0893
BXD38/TyJ f 75.0 1.9885 78.9107 71.0893
BXD39/TyJ f 87.1375 1.572 90.2291 84.0459
BXD40/TyJ f 76.35 1.2835 78.8743 73.8257
BXD42/TyJ f 84.625 2.2232 88.9972 80.2528
BXD43/RwwJ f 93.1 1.6806 96.4051 89.7949
BXD44/RwwJ f 75.04 1.9885 78.9507 71.1293
BXD48a/RwwJ f 81.425 2.2232 85.7972 77.0528
BXD51/RwwJ f 75.3167 1.8152 78.8866 71.7467
BXD55/RwwJ f 79.18 1.9885 83.0907 75.2693
BXD56/RwwJ f 76.74 1.9885 80.6507 72.8293
BXD5/TyJ f 81.7 2.2232 86.0722 77.3278
BXD60/RwwJ f 78.34 1.9885 82.2507 74.4293
BXD61/RwwJ f 81.5333 1.8152 85.1033 77.9634
BXD62/RwwJ f 75.38 1.9885 79.2907 71.4693
BXD65a/RwwJ f 94.925 2.2232 99.2972 90.5528
BXD65b/RwwJ f 83.68 1.9885 87.5907 79.7693
BXD65/RwwJ f 82.1375 1.572 85.2291 79.0459
BXD67/RwwJ f 82.34 1.9885 86.2507 78.4293
BXD69/RwwJ f 80.22 1.9885 84.1307 76.3093
BXD70/RwwJ f 75.0 1.9885 78.9107 71.0893
BXD71/RwwJ f 79.56 1.9885 83.4707 75.6493
BXD73a/RwwJ f 75.0 2.2232 79.3722 70.6278
BXD73b/RwwJ f 75.0 1.9885 78.9107 71.0893
BXD73/RwwJ f 76.68 1.9885 80.5907 72.7693
BXD74/RwwJ f 75.58 1.9885 79.4907 71.6693
BXD75/RwwJ f 83.375 2.2232 87.7472 79.0028
BXD79/RwwJ f 85.92 1.9885 89.8307 82.0093
BXD84/RwwJ f 81.4 1.9885 85.3107 77.4893
BXD87/RwwJ f 81.16 1.9885 85.0707 77.2493
BXD89/RwwJ f 75.0 2.2232 79.3722 70.6278
BXD8/TyJ f 88.1625 1.572 91.2541 85.0709
BXD98/RwwJ f 90.0 2.2232 94.3722 85.6278
BXD9/TyJ f 98.44 1.9885 102.3507 94.5293
C57BL/6J f 83.1164 0.712 84.5166 81.7162
DBA/2J f 75.7383 0.574 76.8672 74.6094




  GWAS USING LINEAR MIXED MODELS