Project measure / variable:   Schughart2   pctbw_d3

ID, description, units MPD:49603   pctbw_d3   body weight as percent of baseline   [%]  post-infection day 3  
influenza A (H1N1) virus study
Data set, strains Schughart2   BXD w/par   56 strains     sex: f     age: 9-18wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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Schughart2 - body weight as percent of baseline post-infection day 3



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested56 strains
Mean of the strain means91.6   %
Median of the strain means91.1   %
SD of the strain means± 4.01
Coefficient of variation (CV)0.0437
Min–max range of strain means81.7   –   100   %
Mean sample size per strain6.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 55 6334.9718 115.1813 8.6519 < 0.0001
Residuals 355 4726.0507 13.3128


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 89.2 5.21   29 0.967 0.0583 80.1, 99.1 -0.61
BXD100/RwwJ f 90.1 2.72   5 1.21 0.0302 87.6, 94.3 -0.38
BXD102/RwwJ f 91.4 2.12   5 0.948 0.0232 88.8, 93.6 -0.06
BXD11/TyJ f 96.5 4.31   8 1.52 0.0447 90.0, 102.0 1.22
BXD12/TyJ f 91.9 4.46   3 2.58 0.0485 87.3, 96.2 0.07
BXD13/TyJ f 97.0 2.02   6 0.826 0.0209 94.4, 100.0 1.34
BXD14/TyJ f 88.0 1.69   5 0.754 0.0192 85.6, 89.4 -0.91
BXD15/TyJ f 92.2 0.958   5 0.428 0.0104 90.8, 93.3 0.14
BXD16/TyJ f 91.2 2.5   5 1.12 0.0274 88.3, 94.4 -0.11
BXD18/TyJ f 84.9 2.84   5 1.27 0.0334 80.9, 87.9 -1.68
BXD19/TyJ f 90.1 3.37   5 1.51 0.0374 86.0, 94.4 -0.38
BXD1/TyJ f 91.7 2.21   5 0.987 0.0241 89.5, 94.3 0.02
BXD20/TyJ f 88.5 1.57   5 0.7 0.0177 86.4, 90.8 -0.78
BXD21/TyJ f 94.0 2.51   4 1.26 0.0267 91.1, 96.2 0.59
BXD23/TyJ f 95.6 5.65   9 1.88 0.0592 87.8, 105.0 0.99
BXD28/TyJ f 81.7 4.99   4 2.5 0.0611 78.8, 89.2 -2.48
BXD2/TyJ f 89.9 0.875   5 0.391 0.00973 88.7, 90.8 -0.43
BXD31/TyJ f 89.0 3.39   7 1.28 0.0381 85.9, 94.6 -0.66
BXD32/TyJ f 86.9 3.04   7 1.15 0.035 82.9, 90.4 -1.18
BXD34/TyJ f 85.1 0.208   3 0.12 0.00245 84.9, 85.3 -1.63
BXD36/TyJ f 85.9 1.51   5 0.676 0.0176 84.1, 87.9 -1.43
BXD38/TyJ f 85.2 2.42   5 1.08 0.0284 81.5, 87.7 -1.6
BXD39/TyJ f 89.7 3.82   8 1.35 0.0427 86.1, 95.9 -0.48
BXD40/TyJ f 90.9 2.92   12 0.842 0.0321 87.3, 97.6 -0.18
BXD42/TyJ f 96.4 3.56   4 1.78 0.0369 92.1, 100.0 1.19
BXD43/RwwJ f 99.0 5.78   7 2.19 0.0584 88.6, 107.0 1.84
BXD44/RwwJ f 89.6 1.94   5 0.866 0.0216 86.7, 91.7 -0.51
BXD48a/RwwJ f 96.9 1.55   4 0.776 0.016 95.6, 98.8 1.32
BXD51/RwwJ f 89.3 1.09   6 0.445 0.0122 87.2, 90.2 -0.58
BXD55/RwwJ f 93.2 0.94   5 0.42 0.0101 91.8, 94.0 0.39
BXD56/RwwJ f 93.8 3.0   5 1.34 0.032 89.2, 97.4 0.54
BXD5/TyJ f 90.7 4.79   4 2.39 0.0528 84.6, 95.5 -0.23
BXD60/RwwJ f 88.9 1.72   5 0.768 0.0193 86.2, 90.9 -0.68
BXD61/RwwJ f 93.9 4.01   6 1.64 0.0427 86.3, 98.2 0.57
BXD62/RwwJ f 87.8 3.28   5 1.47 0.0374 85.6, 93.5 -0.96
BXD65a/RwwJ f 100.0 2.8   4 1.4 0.0279 96.4, 103.0 2.09
BXD65b/RwwJ f 96.6 1.48   5 0.662 0.0153 94.6, 98.1 1.24
BXD65/RwwJ f 95.6 2.56   8 0.906 0.0268 91.7, 99.8 0.99
BXD67/RwwJ f 90.7 1.4   5 0.625 0.0154 89.5, 93.1 -0.23
BXD69/RwwJ f 90.2 1.32   5 0.59 0.0146 88.9, 92.1 -0.36
BXD70/RwwJ f 89.7 3.81   5 1.7 0.0425 84.3, 92.8 -0.48
BXD71/RwwJ f 93.5 1.72   5 0.771 0.0184 91.5, 95.7 0.47
BXD73a/RwwJ f 86.2 1.39   4 0.697 0.0162 84.3, 87.5 -1.36
BXD73b/RwwJ f 90.6 2.11   5 0.944 0.0233 88.2, 93.2 -0.26
BXD73/RwwJ f 90.1 1.72   5 0.771 0.0191 87.3, 91.8 -0.38
BXD74/RwwJ f 93.2 1.15   5 0.512 0.0123 92.2, 94.8 0.39
BXD75/RwwJ f 93.9 1.3   4 0.649 0.0138 92.7, 95.7 0.57
BXD79/RwwJ f 96.1 2.07   5 0.924 0.0215 93.8, 98.6 1.12
BXD84/RwwJ f 91.9 2.01   5 0.897 0.0218 89.3, 93.6 0.07
BXD87/RwwJ f 95.8 2.96   5 1.32 0.0309 91.4, 98.9 1.04
BXD89/RwwJ f 90.1 2.95   4 1.47 0.0327 86.5, 93.7 -0.38
BXD8/TyJ f 96.0 3.88   8 1.37 0.0404 89.4, 101.0 1.09
BXD98/RwwJ f 94.2 5.28   4 2.64 0.0561 89.5, 101.0 0.64
BXD9/TyJ f 99.8 1.83   5 0.82 0.0184 97.8, 102.0 2.04
C57BL/6J f 94.4 5.07   39 0.812 0.0537 81.2, 101.0 0.69
DBA/2J f 86.5 3.87   60 0.5 0.0448 75.6, 97.4 -1.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 89.2448 0.6775 90.5773 87.9123
BXD100/RwwJ f 90.1 1.6317 93.3091 86.8909
BXD102/RwwJ f 91.4 1.6317 94.6091 88.1909
BXD11/TyJ f 96.4625 1.29 98.9995 93.9255
BXD12/TyJ f 91.9333 2.1066 96.0762 87.7904
BXD13/TyJ f 97.0 1.4896 99.9295 94.0705
BXD14/TyJ f 88.02 1.6317 91.2291 84.8109
BXD15/TyJ f 92.22 1.6317 95.4291 89.0109
BXD16/TyJ f 91.16 1.6317 94.3691 87.9509
BXD18/TyJ f 84.9 1.6317 88.1091 81.6909
BXD19/TyJ f 90.1 1.6317 93.3091 86.8909
BXD1/TyJ f 91.68 1.6317 94.8891 88.4709
BXD20/TyJ f 88.48 1.6317 91.6891 85.2709
BXD21/TyJ f 94.0 1.8243 97.5879 90.4121
BXD23/TyJ f 95.5556 1.2162 97.9475 93.1636
BXD28/TyJ f 81.725 1.8243 85.3129 78.1371
BXD2/TyJ f 89.9 1.6317 93.1091 86.6909
BXD31/TyJ f 88.9714 1.3791 91.6836 86.2593
BXD32/TyJ f 86.8571 1.3791 89.5693 84.145
BXD34/TyJ f 85.0667 2.1066 89.2096 80.9238
BXD36/TyJ f 85.88 1.6317 89.0891 82.6709
BXD38/TyJ f 85.18 1.6317 88.3891 81.9709
BXD39/TyJ f 89.6625 1.29 92.1995 87.1255
BXD40/TyJ f 90.8583 1.0533 92.9298 88.7869
BXD42/TyJ f 96.45 1.8243 100.0379 92.8621
BXD43/RwwJ f 99.0 1.3791 101.7122 96.2878
BXD44/RwwJ f 89.58 1.6317 92.7891 86.3709
BXD48a/RwwJ f 96.925 1.8243 100.5129 93.3371
BXD51/RwwJ f 89.2833 1.4896 92.2128 86.3539
BXD55/RwwJ f 93.16 1.6317 96.3691 89.9509
BXD56/RwwJ f 93.78 1.6317 96.9891 90.5709
BXD5/TyJ f 90.7 1.8243 94.2879 87.1121
BXD60/RwwJ f 88.88 1.6317 92.0891 85.6709
BXD61/RwwJ f 93.9333 1.4896 96.8628 91.0039
BXD62/RwwJ f 87.76 1.6317 90.9691 84.5509
BXD65a/RwwJ f 100.5 1.8243 104.0879 96.9121
BXD65b/RwwJ f 96.56 1.6317 99.7691 93.3509
BXD65/RwwJ f 95.6375 1.29 98.1745 93.1005
BXD67/RwwJ f 90.7 1.6317 93.9091 87.4909
BXD69/RwwJ f 90.24 1.6317 93.4491 87.0309
BXD70/RwwJ f 89.66 1.6317 92.8691 86.4509
BXD71/RwwJ f 93.52 1.6317 96.7291 90.3109
BXD73a/RwwJ f 86.175 1.8243 89.7629 82.5871
BXD73b/RwwJ f 90.62 1.6317 93.8291 87.4109
BXD73/RwwJ f 90.08 1.6317 93.2891 86.8709
BXD74/RwwJ f 93.24 1.6317 96.4491 90.0309
BXD75/RwwJ f 93.925 1.8243 97.5129 90.3371
BXD79/RwwJ f 96.14 1.6317 99.3491 92.9309
BXD84/RwwJ f 91.9 1.6317 95.1091 88.6909
BXD87/RwwJ f 95.84 1.6317 99.0491 92.6309
BXD89/RwwJ f 90.1 1.8243 93.6879 86.5121
BXD8/TyJ f 96.05 1.29 98.587 93.513
BXD98/RwwJ f 94.2 1.8243 97.7879 90.6121
BXD9/TyJ f 99.82 1.6317 103.0291 96.6109
C57BL/6J f 94.4008 0.5843 95.5498 93.2517
DBA/2J f 86.4877 0.471 87.414 85.5613




  GWAS USING LINEAR MIXED MODELS