Phenotype measure:   Haston1   BAL_neut



  STRAIN COMPARISON PLOT
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Haston1 - percentage of neutrophils in bronchoalveolar lavage



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested20 strains16 strains
Mean of the strain means9.79   % 8.08   %
Median of the strain means7.76   % 7.29   %
SD of the strain means± 6.85 ± 5.92
Coefficient of variation (CV)0.700 0.732
Min–max range of strain means0.218   –   25.6   % 1.06   –   18.6   %
Mean sample size per strain5.9   mice 5.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 15.2176 15.2176 0.1242 0.7254
strain 8 3107.4966 388.4371 3.1712 0.0035
sex:strain 8 567.5235 70.9404 0.5792 0.7922
Residuals 82 10044.2099 122.4904


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 17.5 22.1   6 9.01 1.26 3.92, 61.5 1.13
129S1/SvImJ m 15.3 12.6   7 4.74 0.82 2.29, 40.1 1.22
A/J f 2.53 1.62   4 0.808 0.637 0.99, 4.81 -1.06
A/J m 2.46 2.65   5 1.18 1.07 0.226, 5.35 -0.95
AKR/J f 7.87 8.06   8 2.85 1.02 1.72, 24.1 -0.28
AKR/J m 2.17 1.85   6 0.754 0.85 0.0, 4.33 -1.0
BALB/cJ f 8.04 5.85   5 2.62 0.728 2.0, 17.0 -0.26
BTBR T+ Itpr3tf/J f 3.14 2.09   2   1.48 0.666 1.66, 4.62 -0.97
BTBR T+ Itpr3tf/J m 11.0 9.65   6 3.94 0.88 0.588, 27.0 0.49
BUB/BnJ f 6.56 6.41   6 2.62 0.977 1.4, 15.0 -0.47
C3H/HeJ f 15.4 18.1   8 6.39 1.18 1.63, 49.2 0.82
C57BL/6J f 0.218 0.0   1   0.0 0.0 0.218, 0.218 -1.4
C57BL/6J m 3.21 5.27   8 1.86 1.64 0.0, 15.9 -0.82
C57BLKS/J m 3.16 3.38   5 1.51 1.07 0.2, 8.8 -0.83
C58/J f 4.33 3.79   9 1.26 0.875 0.4, 12.4 -0.8
CBA/J m 3.64 1.36   5 0.609 0.374 2.6, 5.99 -0.75
CE/J f 7.02 10.2   8 3.61 1.46 0.0, 28.5 -0.4
DBA/2J f 20.1 12.8   10 4.06 0.638 1.6, 43.1 1.51
DBA/2J m 14.6 14.3   9 4.77 0.979 0.385, 38.0 1.1
FVB/NJ f 13.5 10.2   7 3.85 0.755 0.405, 28.7 0.54
FVB/NJ m 14.7 7.79   6 3.18 0.53 5.0, 26.6 1.12
I/LnJ f 6.41 6.23   8 2.2 0.972 0.0, 17.4 -0.49
KK/HlJ f 13.8 9.68   4 4.84 0.7 1.6, 24.1 0.59
KK/HlJ m 18.6 18.9   4 9.46 1.02 4.6, 45.4 1.78
LG/J f 12.8 11.4   10 3.59 0.889 1.2, 33.0 0.44
LP/J m 9.47 8.88   3 5.13 0.938 1.8, 19.2 0.23
MA/MyJ f 25.6 23.9   7 9.05 0.935 0.392, 55.2 2.31
NOD/ShiLtJ f 2.37 1.82   4 0.911 0.768 0.702, 4.96 -1.08
NOD/ShiLtJ m 5.95 6.67   7 2.52 1.12 0.0, 19.8 -0.36
NON/ShiLtJ f 7.65 11.2   3 6.44 1.46 1.02, 20.5 -0.31
NZB/BlNJ m 8.62 7.67   2   5.42 0.89 3.19, 14.0 0.09
NZW/LacJ f 3.77 0.457   3 0.264 0.121 3.35, 4.25 -0.88
NZW/LacJ m 13.9 2.74   2   1.94 0.196 12.0, 15.9 0.98
PL/J f 17.2 5.0   4 2.5 0.291 12.7, 22.8 1.08
SJL/J m 1.5 1.92   3 1.11 1.28 0.2, 3.71 -1.11
SM/J m 1.06 0.312   3 0.18 0.294 0.784, 1.4 -1.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 17.5422 4.5183 26.5305 8.5538
129S1/SvImJ m 15.3147 4.1831 23.6363 6.9931
A/J f 2.5343 5.5338 13.5427 0.0
A/J m 2.4638 4.9496 12.31 0.0
AKR/J f 7.8716 3.913 15.6558 0.0875
AKR/J m 2.1734 4.5183 11.1617 0.0
BTBR T+ Itpr3tf/J f 3.1405 7.8259 18.7088 0.0
BTBR T+ Itpr3tf/J m 10.9702 4.5183 19.9585 1.9819
DBA/2J f 20.1098 3.4999 27.0721 13.1475
DBA/2J m 14.614 3.6892 21.9529 7.275
FVB/NJ f 13.4918 4.1831 21.8134 5.1703
FVB/NJ m 14.7033 4.5183 23.6917 5.715
KK/HlJ f 13.825 5.5338 24.8334 2.8166
KK/HlJ m 18.5995 5.5338 29.6079 7.5911
NOD/ShiLtJ f 2.3734 5.5338 13.3819 0.0
NOD/ShiLtJ m 5.9508 4.1831 14.2723 0.0
NZW/LacJ f 3.7727 6.3898 16.4841 0.0
NZW/LacJ m 13.935 7.8259 29.5033 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 16.4284 3.0787 22.553 10.3039
A/J both 2.499 3.7122 9.8837 0.0
AKR/J both 5.0225 2.9886 10.9677 0.0
BTBR T+ Itpr3tf/J both 7.0553 4.5183 16.0437 0.0
DBA/2J both 17.3619 2.5426 22.4199 12.3039
FVB/NJ both 14.0976 3.0787 20.2221 7.9731
KK/HlJ both 16.2122 3.913 23.9964 8.4281
NOD/ShiLtJ both 4.1621 3.4685 11.062 0.0
NZW/LacJ both 8.8538 5.0516 18.9031 0.0




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.