Phenotype measure:   HMDPpheno4   ctx_imob


  STRAIN COMPARISON PLOT
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HMDPpheno4 - contextual fear percent time immobile, day 2



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested94 strains
Mean of the strain means34.7   %
Median of the strain means34.1   %
SD of the strain means± 14.8
Coefficient of variation (CV)0.427
Min–max range of strain means6.53   –   81.5   %
Mean sample size per strain7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 93 142874.1075 1536.2807 4.9134 < 0.0001
Residuals 593 185413.5819 312.6705


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 37.8 14.3   4 7.15 0.378 20.0, 53.1 0.21
A/J m 60.0 19.6   5 8.75 0.326 42.5, 91.9 1.7
AKR/J m 50.0 24.2   8 8.56 0.485 26.9, 90.1 1.03
AXB10/PgnJ m 39.7 11.1   3 6.4 0.279 27.6, 49.2 0.34
AXB12/PgnJ m 44.2 15.7   8 5.54 0.354 15.6, 68.5 0.64
AXB13/PgnJ m 36.9 7.77   8 2.75 0.21 27.3, 49.8 0.15
AXB15/PgnJ m 53.0 12.4   7 4.69 0.234 40.6, 70.2 1.23
AXB19a/PgnJ m 56.7 21.8   4 10.9 0.385 38.8, 88.5 1.48
AXB19/PgnJ m 43.7 14.7   15 3.8 0.337 17.7, 67.0 0.6
AXB1/PgnJ m 40.9 16.9   8 5.97 0.413 9.29, 58.4 0.42
AXB23/PgnJ m 48.6 7.45   4 3.72 0.153 38.9, 55.3 0.93
AXB24/PgnJ m 52.8 11.9   6 4.86 0.226 40.4, 69.8 1.22
AXB2/PgnJ m 40.2 18.0   8 6.36 0.447 22.2, 76.4 0.37
AXB4/PgnJ m 49.6 4.8   4 2.4 0.0968 46.2, 56.7 1.0
AXB5/PgnJ m 29.6 15.8   8 5.58 0.534 5.99, 52.6 -0.35
AXB6/PgnJ m 31.4 24.5   9 8.15 0.779 0.87, 63.8 -0.22
AXB8/PgnJ m 27.6 27.1   7 10.2 0.98 2.15, 71.2 -0.48
B6cC3-1/KccJ m 38.8 14.3   7 5.4 0.368 20.1, 66.2 0.27
BALB/cJ m 34.0 16.6   12 4.8 0.489 12.3, 70.6 -0.05
BTBR T+ Itpr3tf/J m 31.5 11.9   8 4.22 0.379 16.5, 57.9 -0.22
BUB/BnJ m 30.6 15.3   3 8.82 0.499 20.3, 48.2 -0.28
BXA12/PgnJ m 30.5 19.5   7 7.38 0.64 8.02, 56.9 -0.28
BXA13/PgnJ m 58.7 15.4   10 4.87 0.263 38.7, 85.4 1.62
BXA14/PgnJ m 50.3 23.1   10 7.31 0.46 12.0, 80.7 1.05
BXA16/PgnJ m 64.2 19.5   7 7.39 0.304 29.9, 93.9 1.99
BXA1/PgnJ m 43.0 10.4   3 5.98 0.241 35.9, 54.9 0.56
BXA24/PgnJ m 53.8 12.4   6 5.07 0.231 37.0, 71.2 1.29
BXA25/PgnJ m 30.0 26.7   8 9.45 0.891 0.46, 60.7 -0.32
BXA26/PgnJ m 34.3 10.6   8 3.74 0.308 20.7, 48.0 -0.03
BXA2/PgnJ m 81.5 15.1   8 5.35 0.186 50.7, 99.3 3.15
BXA4/PgnJ m 61.7 14.6   8 5.15 0.236 48.4, 92.5 1.82
BXA7/PgnJ m 41.2 14.4   8 5.1 0.35 25.9, 67.4 0.44
BXA8/PgnJ m 43.5 19.0   8 6.73 0.437 22.4, 70.6 0.59
BXD11/TyJ m 32.1 31.7   5 14.2 0.988 3.95, 66.9 -0.18
BXD12/TyJ m 26.6 17.3   8 6.12 0.649 7.67, 46.0 -0.55
BXD13/TyJ m 10.3 3.35   4 1.67 0.326 5.89, 14.0 -1.65
BXD14/TyJ m 50.3 8.19   8 2.89 0.163 40.5, 62.9 1.05
BXD15/TyJ m 22.1 16.3   6 6.66 0.739 2.07, 47.8 -0.85
BXD16/TyJ m 20.5 7.29   6 2.98 0.356 11.2, 32.3 -0.96
BXD18/TyJ m 27.5 18.7   7 7.06 0.679 12.5, 67.7 -0.49
BXD19/TyJ m 30.6 11.3   7 4.26 0.368 14.6, 48.5 -0.28
BXD1/TyJ m 29.9 25.2   7 9.53 0.843 2.02, 72.3 -0.32
BXD20/TyJ m 45.1 22.0   8 7.79 0.488 14.1, 73.0 0.7
BXD21/TyJ m 12.1 11.3   6 4.6 0.934 1.3, 30.1 -1.52
BXD24/TyJ m 12.0 4.5   4 2.25 0.376 6.39, 17.0 -1.53
BXD27/TyJ m 22.4 12.1   8 4.27 0.538 11.5, 47.0 -0.83
BXD28/TyJ m 10.9 14.8   4 7.39 1.35 2.25, 33.0 -1.61
BXD29-Tlr4lps-2J/J m 16.4 12.5   7 4.73 0.762 0.86, 32.7 -1.23
BXD2/TyJ m 43.8 9.5   4 4.75 0.217 32.1, 52.7 0.61
BXD31/TyJ m 16.6 12.8   4 6.41 0.775 5.72, 31.6 -1.22
BXD32/TyJ m 28.2 20.8   5 9.31 0.738 10.8, 61.7 -0.44
BXD33/TyJ m 56.6 16.8   3 9.7 0.297 46.8, 76.0 1.47
BXD34/TyJ m 35.4 19.2   8 6.78 0.541 13.8, 69.5 0.05
BXD36/TyJ m 33.0 20.8   8 7.35 0.63 7.03, 56.5 -0.12
BXD38/TyJ m 31.0 23.4   8 8.28 0.756 8.2, 72.6 -0.25
BXD39/TyJ m 55.8 10.9   9 3.62 0.194 43.7, 74.5 1.42
BXD40/TyJ m 37.2 16.9   8 5.98 0.455 16.1, 61.6 0.17
BXD42/TyJ m 27.4 16.9   9 5.62 0.616 6.51, 52.8 -0.49
BXD5/TyJ m 39.7 12.5   7 4.73 0.315 22.4, 52.1 0.34
BXD6/TyJ m 22.9 13.0   7 4.91 0.567 4.59, 39.2 -0.8
BXD8/TyJ m 21.0 13.3   8 4.71 0.635 5.39, 42.1 -0.92
BXD9/TyJ m 11.5 20.4   8 7.22 1.78 0.38, 60.4 -1.56
BXH10/TyJ m 29.8 24.1   10 7.61 0.806 2.76, 75.9 -0.33
BXH14/TyJ m 14.0 18.7   9 6.22 1.34 2.46, 62.3 -1.4
BXH19/TyJ m 39.6 22.4   14 5.98 0.564 7.74, 92.4 0.33
BXH20/KccJ m 58.8 9.16   6 3.74 0.156 49.0, 71.8 1.62
BXH22/KccJ m 29.5 21.6   9 7.19 0.731 4.41, 71.6 -0.35
BXH2/TyJ m 42.3 23.5   15 6.06 0.556 13.7, 82.6 0.51
BXH4/TyJ m 20.0 12.7   7 4.8 0.634 6.14, 42.8 -0.99
BXH6/TyJ m 41.1 23.1   8 8.15 0.561 19.8, 86.3 0.43
BXH7/TyJ m 44.2 15.8   3 9.12 0.357 34.8, 62.5 0.64
BXH8/TyJ m 36.2 23.1   6 9.43 0.638 6.42, 74.6 0.1
BXH9/TyJ m 20.5 5.83   5 2.61 0.284 12.5, 27.6 -0.96
C3H/HeJ m 7.58 3.54   8 1.25 0.467 3.73, 14.4 -1.83
C57BL/6J m 25.3 16.8   12 4.85 0.663 1.78, 46.5 -0.63
C57L/J m 7.09 2.53   8 0.895 0.357 3.28, 11.1 -1.86
C58/J m 36.1 20.4   8 7.22 0.566 14.6, 73.6 0.09
CAST/EiJ m 6.53 0.858   3 0.495 0.131 5.9, 7.51 -1.9
CBA/J m 28.6 6.8   11 2.05 0.238 19.0, 41.2 -0.41
CE/J m 31.3 20.9   4 10.5 0.667 2.05, 50.7 -0.23
DBA/2J m 7.19 7.68   12 2.22 1.07 0.33, 24.4 -1.86
FVB/NJ m 19.4 9.86   12 2.85 0.507 4.46, 38.3 -1.03
KK/HlJ m 42.6 20.0   7 7.57 0.47 18.2, 73.8 0.53
LG/J m 24.4 2.93   3 1.69 0.12 21.4, 27.3 -0.7
LP/J m 46.4 33.2   11 10.0 0.715 5.94, 86.3 0.79
MA/MyJ m 19.5 9.91   4 4.95 0.507 10.3, 33.6 -1.03
NOD/ShiLtJ m 34.9 26.1   8 9.24 0.749 9.16, 88.2 0.01
NON/ShiLtJ m 55.8 27.4   7 10.4 0.491 23.2, 90.6 1.42
NZB/BlNJ m 38.7 15.7   7 5.94 0.407 24.1, 72.3 0.27
NZW/LacJ m 45.2 9.38   4 4.69 0.208 37.3, 56.6 0.71
PL/J m 34.3 4.82   4 2.41 0.141 29.0, 40.6 -0.03
SEA/GnJ m 22.5 15.6   7 5.91 0.696 7.09, 43.3 -0.82
SM/J m 21.6 18.0   16 4.5 0.834 1.58, 75.4 -0.88
SWR/J m 33.8 18.9   11 5.69 0.559 17.9, 85.2 -0.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 37.815 8.8412 55.179 20.451
A/J m 60.034 7.9079 75.5648 44.5032
AKR/J m 49.9675 6.2517 62.2457 37.6893
AXB10/PgnJ m 39.7467 10.209 59.7968 19.6965
AXB12/PgnJ m 44.1662 6.2517 56.4444 31.8881
AXB13/PgnJ m 36.92 6.2517 49.1982 24.6418
AXB15/PgnJ m 53.0014 6.6834 66.1274 39.8755
AXB19a/PgnJ m 56.735 8.8412 74.099 39.371
AXB19/PgnJ m 43.682 4.5656 52.6487 34.7153
AXB1/PgnJ m 40.9063 6.2517 53.1844 28.6281
AXB23/PgnJ m 48.64 8.8412 66.004 31.276
AXB24/PgnJ m 52.8 7.2188 66.9776 38.6224
AXB2/PgnJ m 40.185 6.2517 52.4632 27.9068
AXB4/PgnJ m 49.565 8.8412 66.929 32.201
AXB5/PgnJ m 29.5575 6.2517 41.8357 17.2793
AXB6/PgnJ m 31.3922 5.8942 42.9682 19.8162
AXB8/PgnJ m 27.6029 6.6834 40.7288 14.4769
B6cC3-1/KccJ m 38.8143 6.6834 51.9402 25.6884
BALB/cJ m 34.0067 5.1045 44.0318 23.9816
BTBR T+ Itpr3tf/J m 31.48 6.2517 43.7582 19.2018
BUB/BnJ m 30.64 10.209 50.6902 10.5898
BXA12/PgnJ m 30.5157 6.6834 43.6416 17.3898
BXA13/PgnJ m 58.67 5.5917 69.6519 47.6881
BXA14/PgnJ m 50.295 5.5917 61.2769 39.3131
BXA16/PgnJ m 64.2386 6.6834 77.3645 51.1126
BXA1/PgnJ m 43.0167 10.209 63.0668 22.9665
BXA24/PgnJ m 53.7867 7.2188 67.9643 39.6091
BXA25/PgnJ m 30.015 6.2517 42.2932 17.7368
BXA26/PgnJ m 34.2837 6.2517 46.5619 22.0056
BXA2/PgnJ m 81.5 6.2517 93.7782 69.2218
BXA4/PgnJ m 61.7187 6.2517 73.9969 49.4406
BXA7/PgnJ m 41.2075 6.2517 53.4857 28.9293
BXA8/PgnJ m 43.5437 6.2517 55.8219 31.2656
BXD11/TyJ m 32.094 7.9079 47.6248 16.5632
BXD12/TyJ m 26.6375 6.2517 38.9157 14.3593
BXD13/TyJ m 10.2625 8.8412 27.6265 0.0
BXD14/TyJ m 50.3387 6.2517 62.6169 38.0606
BXD15/TyJ m 22.09 7.2188 36.2676 7.9124
BXD16/TyJ m 20.4767 7.2188 34.6543 6.2991
BXD18/TyJ m 27.5129 6.6834 40.6388 14.3869
BXD19/TyJ m 30.5929 6.6834 43.7188 17.4669
BXD1/TyJ m 29.9086 6.6834 43.0345 16.7826
BXD20/TyJ m 45.115 6.2517 57.3932 32.8368
BXD21/TyJ m 12.07 7.2188 26.2476 0.0
BXD24/TyJ m 11.97 8.8412 29.334 0.0
BXD27/TyJ m 22.4188 6.2517 34.6969 10.1406
BXD28/TyJ m 10.945 8.8412 28.309 0.0
BXD29-Tlr4lps-2J/J m 16.4271 6.6834 29.5531 3.3012
BXD2/TyJ m 43.785 8.8412 61.149 26.421
BXD31/TyJ m 16.5625 8.8412 33.9265 0.0
BXD32/TyJ m 28.238 7.9079 43.7688 12.7072
BXD33/TyJ m 56.6233 10.209 76.6735 36.5732
BXD34/TyJ m 35.4138 6.2517 47.6919 23.1356
BXD36/TyJ m 33.0425 6.2517 45.3207 20.7643
BXD38/TyJ m 30.9675 6.2517 43.2457 18.6893
BXD39/TyJ m 55.8378 5.8942 67.4138 44.2618
BXD40/TyJ m 37.1738 6.2517 49.4519 24.8956
BXD42/TyJ m 27.3522 5.8942 38.9282 15.7762
BXD5/TyJ m 39.7243 6.6834 52.8502 26.5984
BXD6/TyJ m 22.9229 6.6834 36.0488 9.7969
BXD8/TyJ m 21.0013 6.2517 33.2794 8.7231
BXD9/TyJ m 11.47 6.2517 23.7482 0.0
BXH10/TyJ m 29.837 5.5917 40.8189 18.8551
BXH14/TyJ m 13.9733 5.8942 25.5493 2.3974
BXH19/TyJ m 39.6379 4.7258 48.9193 30.3564
BXH20/KccJ m 58.7517 7.2188 72.9293 44.5741
BXH22/KccJ m 29.5022 5.8942 41.0782 17.9262
BXH2/TyJ m 42.2507 4.5656 51.2174 33.284
BXH4/TyJ m 20.0471 6.6834 33.1731 6.9212
BXH6/TyJ m 41.12 6.2517 53.3982 28.8418
BXH7/TyJ m 44.2233 10.209 64.2735 24.1732
BXH8/TyJ m 36.225 7.2188 50.4026 22.0474
BXH9/TyJ m 20.544 7.9079 36.0748 5.0132
C3H/HeJ m 7.5775 6.2517 19.8557 0.0
C57BL/6J m 25.305 5.1045 35.3301 15.2799
C57L/J m 7.0887 6.2517 19.3669 0.0
C58/J m 36.0512 6.2517 48.3294 23.7731
CAST/EiJ m 6.5333 10.209 26.5835 0.0
CBA/J m 28.6164 5.3315 39.0872 18.1455
CE/J m 31.34 8.8412 48.704 13.976
DBA/2J m 7.1867 5.1045 17.2118 0.0
FVB/NJ m 19.4392 5.1045 29.4643 9.4141
KK/HlJ m 42.6057 6.6834 55.7316 29.4798
LG/J m 24.3767 10.209 44.4268 4.3265
LP/J m 46.4273 5.3315 56.8981 35.9564
MA/MyJ m 19.53 8.8412 36.894 2.166
NOD/ShiLtJ m 34.875 6.2517 47.1532 22.5968
NON/ShiLtJ m 55.7657 6.6834 68.8916 42.6398
NZB/BlNJ m 38.6514 6.6834 51.7774 25.5255
NZW/LacJ m 45.21 8.8412 62.574 27.846
PL/J m 34.2775 8.8412 51.6415 16.9135
SEA/GnJ m 22.4771 6.6834 35.6031 9.3512
SM/J m 21.5825 4.4206 30.2645 12.9005
SWR/J m 33.7718 5.3315 44.2427 23.301




  GWAS USING LINEAR MIXED MODELS