Project measure / variable:   HMDPpheno4   ftr_post_imob

ID, description, units MPD:46822   ftr_post_imob   fear training, percent time immobile, day 1   [%]  post-stimulus  
Data set, strains HMDPpheno4   HMDP w/par   94 strains     sex: m     age: 10wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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HMDPpheno4 - fear training, percent time immobile, day 1 post-stimulus



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested94 strains
Mean of the strain means29.3   %
Median of the strain means28.8   %
SD of the strain means± 14.2
Coefficient of variation (CV)0.485
Min–max range of strain means2.18   –   68.8   %
Mean sample size per strain7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 93 116101.6558 1248.4049 4.4578 < 0.0001
Residuals 593 166070.0112 280.0506


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 51.4 5.85   4 2.92 0.114 46.6, 59.1 1.55
A/J m 44.3 14.3   5 6.39 0.322 28.0, 65.4 1.05
AKR/J m 34.2 10.1   8 3.57 0.295 20.5, 52.7 0.34
AXB10/PgnJ m 16.3 14.6   3 8.46 0.898 5.54, 33.0 -0.92
AXB12/PgnJ m 38.8 13.2   8 4.68 0.341 27.9, 65.0 0.67
AXB13/PgnJ m 33.8 13.1   8 4.63 0.387 18.2, 56.7 0.32
AXB15/PgnJ m 37.0 26.0   7 9.83 0.703 8.24, 79.5 0.54
AXB19a/PgnJ m 53.0 11.3   4 5.63 0.213 40.2, 64.6 1.67
AXB19/PgnJ m 30.4 24.0   15 6.21 0.792 1.73, 58.3 0.08
AXB1/PgnJ m 31.7 11.7   8 4.15 0.37 18.4, 49.2 0.17
AXB23/PgnJ m 50.4 15.9   4 7.95 0.315 27.9, 64.7 1.48
AXB24/PgnJ m 40.3 13.0   6 5.32 0.324 27.1, 57.1 0.77
AXB2/PgnJ m 36.3 8.13   8 2.87 0.224 25.7, 50.4 0.49
AXB4/PgnJ m 38.6 3.79   4 1.89 0.098 33.5, 42.6 0.65
AXB5/PgnJ m 28.0 8.2   8 2.9 0.293 10.5, 35.1 -0.09
AXB6/PgnJ m 31.6 21.7   9 7.24 0.688 0.74, 66.7 0.16
AXB8/PgnJ m 15.9 21.3   7 8.06 1.34 0.15, 54.3 -0.94
B6cC3-1/KccJ m 31.4 7.79   7 2.94 0.248 23.7, 45.1 0.15
BALB/cJ m 28.1 19.9   12 5.74 0.707 1.4, 53.6 -0.09
BTBR T+ Itpr3tf/J m 26.0 13.2   8 4.68 0.51 15.4, 51.3 -0.23
BUB/BnJ m 45.6 24.4   3 14.1 0.534 17.8, 63.0 1.15
BXA12/PgnJ m 18.1 11.1   7 4.19 0.613 4.32, 35.5 -0.79
BXA13/PgnJ m 37.2 24.1   10 7.62 0.648 8.47, 64.7 0.55
BXA14/PgnJ m 28.7 26.4   10 8.34 0.92 0.15, 65.7 -0.04
BXA16/PgnJ m 60.7 11.4   7 4.31 0.188 50.3, 80.5 2.21
BXA1/PgnJ m 27.9 10.8   3 6.26 0.389 15.5, 35.8 -0.1
BXA24/PgnJ m 35.9 16.7   6 6.81 0.464 16.5, 60.8 0.46
BXA25/PgnJ m 15.0 13.2   8 4.65 0.876 0.54, 32.6 -1.01
BXA26/PgnJ m 44.0 13.8   8 4.9 0.315 17.5, 62.0 1.03
BXA2/PgnJ m 55.0 10.3   8 3.63 0.187 38.0, 72.7 1.81
BXA4/PgnJ m 50.9 19.6   8 6.93 0.385 23.6, 78.2 1.52
BXA7/PgnJ m 44.0 11.9   8 4.22 0.271 32.9, 64.0 1.03
BXA8/PgnJ m 18.6 19.6   8 6.94 1.06 0.64, 49.4 -0.75
BXD11/TyJ m 32.7 27.8   5 12.4 0.849 8.63, 72.0 0.24
BXD12/TyJ m 40.9 27.6   8 9.75 0.675 5.78, 79.0 0.82
BXD13/TyJ m 2.73 2.78   4 1.39 1.02 0.49, 6.44 -1.87
BXD14/TyJ m 48.0 18.4   8 6.52 0.384 18.0, 77.0 1.31
BXD15/TyJ m 46.4 15.7   6 6.42 0.339 26.7, 67.0 1.2
BXD16/TyJ m 16.9 11.0   6 4.49 0.65 3.98, 34.5 -0.87
BXD18/TyJ m 22.0 14.7   7 5.54 0.666 3.95, 41.5 -0.52
BXD19/TyJ m 16.3 10.0   7 3.78 0.614 3.9, 28.6 -0.92
BXD1/TyJ m 25.6 19.3   7 7.29 0.754 3.53, 49.0 -0.26
BXD20/TyJ m 27.4 21.9   8 7.75 0.798 2.85, 53.5 -0.14
BXD21/TyJ m 8.33 2.46   6 1.01 0.295 5.56, 11.0 -1.48
BXD24/TyJ m 5.06 3.21   4 1.6 0.634 1.01, 8.43 -1.71
BXD27/TyJ m 29.2 28.3   8 10.0 0.968 2.32, 69.0 -0.01
BXD28/TyJ m 19.2 18.5   4 9.25 0.966 5.47, 46.4 -0.71
BXD29-Tlr4lps-2J/J m 8.58 5.8   7 2.19 0.676 2.33, 18.2 -1.46
BXD2/TyJ m 41.0 10.9   4 5.44 0.265 31.4, 55.4 0.82
BXD31/TyJ m 26.6 22.6   4 11.3 0.85 12.2, 60.3 -0.19
BXD32/TyJ m 17.9 27.2   5 12.2 1.52 3.23, 66.2 -0.8
BXD33/TyJ m 56.2 22.8   3 13.1 0.405 30.0, 71.6 1.89
BXD34/TyJ m 41.6 15.8   8 5.58 0.38 16.4, 65.9 0.86
BXD36/TyJ m 44.3 15.0   8 5.3 0.338 26.5, 63.0 1.05
BXD38/TyJ m 30.6 17.3   8 6.1 0.563 8.49, 52.0 0.09
BXD39/TyJ m 28.8 20.5   9 6.84 0.714 6.01, 62.5 -0.04
BXD40/TyJ m 17.1 11.6   8 4.1 0.678 6.05, 36.3 -0.86
BXD42/TyJ m 23.2 15.1   9 5.03 0.652 10.4, 55.3 -0.43
BXD5/TyJ m 39.4 19.7   7 7.43 0.499 13.4, 76.8 0.71
BXD6/TyJ m 25.1 10.6   7 4.02 0.423 7.64, 39.0 -0.3
BXD8/TyJ m 39.5 27.6   8 9.77 0.7 5.57, 71.0 0.72
BXD9/TyJ m 6.58 7.38   8 2.61 1.12 0.07, 17.1 -1.6
BXH10/TyJ m 17.1 13.9   10 4.38 0.812 2.42, 49.4 -0.86
BXH14/TyJ m 20.5 17.5   9 5.83 0.854 3.12, 55.6 -0.62
BXH19/TyJ m 23.0 18.6   14 4.96 0.808 1.51, 74.0 -0.44
BXH20/KccJ m 36.4 8.22   6 3.36 0.226 20.2, 42.1 0.5
BXH22/KccJ m 37.7 21.7   9 7.24 0.576 2.74, 61.6 0.59
BXH2/TyJ m 38.5 20.7   15 5.34 0.538 3.96, 67.4 0.65
BXH4/TyJ m 6.73 1.78   7 0.671 0.264 5.23, 9.87 -1.59
BXH6/TyJ m 37.0 17.1   8 6.06 0.463 1.48, 59.8 0.54
BXH7/TyJ m 68.8 19.7   3 11.4 0.287 46.0, 81.2 2.78
BXH8/TyJ m 23.8 21.3   6 8.69 0.894 2.05, 59.9 -0.39
BXH9/TyJ m 11.3 10.6   5 4.76 0.944 0.3, 22.2 -1.27
C3H/HeJ m 5.53 5.58   8 1.97 1.01 0.34, 13.1 -1.67
C57BL/6J m 23.5 15.7   12 4.53 0.669 0.07, 44.8 -0.41
C57L/J m 12.7 5.55   8 1.96 0.436 7.31, 22.0 -1.17
C58/J m 26.3 17.2   8 6.08 0.654 9.64, 63.4 -0.21
CAST/EiJ m 2.18 2.27   3 1.31 1.04 0.77, 4.8 -1.91
CBA/J m 7.62 7.86   11 2.37 1.03 0.96, 28.8 -1.53
CE/J m 55.1 25.4   4 12.7 0.461 34.4, 90.0 1.81
DBA/2J m 13.9 10.2   12 2.95 0.737 0.1, 28.9 -1.09
FVB/NJ m 14.6 6.48   12 1.87 0.443 8.41, 32.2 -1.04
KK/HlJ m 12.2 15.4   7 5.81 1.26 0.25, 43.2 -1.21
LG/J m 26.9 3.35   3 1.93 0.125 23.4, 30.1 -0.17
LP/J m 30.8 20.1   11 6.05 0.653 4.84, 62.0 0.1
MA/MyJ m 32.5 8.94   4 4.47 0.275 25.5, 45.1 0.22
NOD/ShiLtJ m 34.5 19.1   8 6.74 0.552 16.0, 61.7 0.36
NON/ShiLtJ m 23.1 9.06   7 3.43 0.393 14.2, 41.4 -0.44
NZB/BlNJ m 13.3 11.3   7 4.29 0.852 2.89, 37.0 -1.13
NZW/LacJ m 36.7 9.7   4 4.85 0.265 24.8, 47.5 0.52
PL/J m 25.9 9.2   4 4.6 0.355 16.4, 34.2 -0.24
SEA/GnJ m 28.7 23.3   7 8.79 0.81 12.5, 76.4 -0.04
SM/J m 13.6 17.8   16 4.44 1.31 0.5, 61.9 -1.11
SWR/J m 29.4 16.2   11 4.89 0.551 12.1, 56.6 0.01


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 51.425 8.3674 67.8583 34.9917
A/J m 44.326 7.484 59.0244 29.6276
AKR/J m 34.1963 5.9166 45.8163 22.5762
AXB10/PgnJ m 16.32 9.6618 35.2955 0.0
AXB12/PgnJ m 38.7912 5.9166 50.4113 27.1712
AXB13/PgnJ m 33.8087 5.9166 45.4288 22.1887
AXB15/PgnJ m 37.0014 6.3251 49.4238 24.5791
AXB19a/PgnJ m 52.985 8.3674 69.4183 36.5517
AXB19/PgnJ m 30.3587 4.3209 38.8448 21.8726
AXB1/PgnJ m 31.7375 5.9166 43.3576 20.1174
AXB23/PgnJ m 50.405 8.3674 66.8383 33.9717
AXB24/PgnJ m 40.2567 6.8319 53.6744 26.839
AXB2/PgnJ m 36.3288 5.9166 47.9488 24.7087
AXB4/PgnJ m 38.625 8.3674 55.0583 22.1917
AXB5/PgnJ m 28.0237 5.9166 39.6438 16.4037
AXB6/PgnJ m 31.5811 5.5782 42.5366 20.6256
AXB8/PgnJ m 15.9214 6.3251 28.3438 3.4991
B6cC3-1/KccJ m 31.3814 6.3251 43.8038 18.9591
BALB/cJ m 28.1142 4.8309 37.6019 18.6264
BTBR T+ Itpr3tf/J m 25.9587 5.9166 37.5788 14.3387
BUB/BnJ m 45.6267 9.6618 64.6022 26.6512
BXA12/PgnJ m 18.1043 6.3251 30.5267 5.6819
BXA13/PgnJ m 37.195 5.292 47.5883 26.8017
BXA14/PgnJ m 28.669 5.292 39.0623 18.2757
BXA16/PgnJ m 60.6814 6.3251 73.1038 48.2591
BXA1/PgnJ m 27.87 9.6618 46.8455 8.8945
BXA24/PgnJ m 35.9017 6.8319 49.3194 22.484
BXA25/PgnJ m 15.0225 5.9166 26.6426 3.4024
BXA26/PgnJ m 43.965 5.9166 55.5851 32.3449
BXA2/PgnJ m 55.0188 5.9166 66.6388 43.3987
BXA4/PgnJ m 50.895 5.9166 62.5151 39.2749
BXA7/PgnJ m 44.0313 5.9166 55.6513 32.4112
BXA8/PgnJ m 18.5888 5.9166 30.2088 6.9687
BXD11/TyJ m 32.698 7.484 47.3964 17.9996
BXD12/TyJ m 40.8625 5.9166 52.4826 29.2424
BXD13/TyJ m 2.725 8.3674 19.1583 0.0
BXD14/TyJ m 47.995 5.9166 59.6151 36.3749
BXD15/TyJ m 46.4367 6.8319 59.8544 33.019
BXD16/TyJ m 16.9167 6.8319 30.3344 3.499
BXD18/TyJ m 22.0114 6.3251 34.4338 9.5891
BXD19/TyJ m 16.2671 6.3251 28.6895 3.8448
BXD1/TyJ m 25.5743 6.3251 37.9967 13.1519
BXD20/TyJ m 27.4463 5.9166 39.0663 15.8262
BXD21/TyJ m 8.3333 6.8319 21.751 0.0
BXD24/TyJ m 5.055 8.3674 21.4883 0.0
BXD27/TyJ m 29.2425 5.9166 40.8626 17.6224
BXD28/TyJ m 19.1525 8.3674 35.5858 2.7192
BXD29-Tlr4lps-2J/J m 8.5814 6.3251 21.0038 0.0
BXD2/TyJ m 41.03 8.3674 57.4633 24.5967
BXD31/TyJ m 26.6275 8.3674 43.0608 10.1942
BXD32/TyJ m 17.864 7.484 32.5624 3.1656
BXD33/TyJ m 56.1667 9.6618 75.1422 37.1912
BXD34/TyJ m 41.5975 5.9166 53.2176 29.9774
BXD36/TyJ m 44.32 5.9166 55.9401 32.6999
BXD38/TyJ m 30.6225 5.9166 42.2426 19.0024
BXD39/TyJ m 28.7544 5.5782 39.7099 17.7989
BXD40/TyJ m 17.11 5.9166 28.7301 5.4899
BXD42/TyJ m 23.1544 5.5782 34.1099 12.1989
BXD5/TyJ m 39.4014 6.3251 51.8238 26.9791
BXD6/TyJ m 25.1414 6.3251 37.5638 12.7191
BXD8/TyJ m 39.4637 5.9166 51.0838 27.8437
BXD9/TyJ m 6.5788 5.9166 18.1988 0.0
BXH10/TyJ m 17.067 5.292 27.4603 6.6737
BXH14/TyJ m 20.4767 5.5782 31.4322 9.5212
BXH19/TyJ m 22.9579 4.4725 31.7418 14.1739
BXH20/KccJ m 36.4417 6.8319 49.8594 23.024
BXH22/KccJ m 37.7267 5.5782 48.6822 26.7712
BXH2/TyJ m 38.4667 4.3209 46.9528 29.9806
BXH4/TyJ m 6.7314 6.3251 19.1538 0.0
BXH6/TyJ m 36.9913 5.9166 48.6113 25.3712
BXH7/TyJ m 68.7633 9.6618 87.7388 49.7878
BXH8/TyJ m 23.8217 6.8319 37.2394 10.404
BXH9/TyJ m 11.272 7.484 25.9704 0.0
C3H/HeJ m 5.5275 5.9166 17.1476 0.0
C57BL/6J m 23.4558 4.8309 32.9436 13.9681
C57L/J m 12.71 5.9166 24.3301 1.0899
C58/J m 26.275 5.9166 37.8951 14.6549
CAST/EiJ m 2.1767 9.6618 21.1522 0.0
CBA/J m 7.6218 5.0457 17.5314 0.0
CE/J m 55.0775 8.3674 71.5108 38.6442
DBA/2J m 13.855 4.8309 23.3427 4.3673
FVB/NJ m 14.625 4.8309 24.1127 5.1373
KK/HlJ m 12.2343 6.3251 24.6567 0.0
LG/J m 26.8667 9.6618 45.8422 7.8912
LP/J m 30.7591 5.0457 40.6687 20.8495
MA/MyJ m 32.455 8.3674 48.8883 16.0217
NOD/ShiLtJ m 34.5362 5.9166 46.1563 22.9162
NON/ShiLtJ m 23.0886 6.3251 35.5109 10.6662
NZB/BlNJ m 13.3157 6.3251 25.7381 0.8933
NZW/LacJ m 36.655 8.3674 53.0883 20.2217
PL/J m 25.905 8.3674 42.3383 9.4717
SEA/GnJ m 28.7357 6.3251 41.1581 16.3133
SM/J m 13.55 4.1837 21.7666 5.3334
SWR/J m 29.4291 5.0457 39.3387 19.5195




  GWAS USING LINEAR MIXED MODELS