Project measure / variable:   HMDPpheno4   ftr_post_vel

ID, description, units MPD:46812   ftr_post_vel   fear training, velocity, day 1   [cm/s]  post-stimulus  
Data set, strains HMDPpheno4   HMDP w/par   94 strains     sex: m     age: 10wks
Procedure fear conditioning test
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HMDPpheno4 - fear training, velocity, day 1 post-stimulus



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested94 strains
Mean of the strain means3.68   cm/s
Median of the strain means3.54   cm/s
SD of the strain means± 1.03
Coefficient of variation (CV)0.278
Min–max range of strain means2.02   –   7.70   cm/s
Mean sample size per strain7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 93 661.7845 7.116 4.0458 < 0.0001
Residuals 593 1042.9948 1.7588


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 2.84 0.353   4 0.177 0.124 2.44, 3.28 -0.82
A/J m 3.14 0.833   5 0.372 0.265 1.99, 3.98 -0.53
AKR/J m 4.26 0.945   8 0.334 0.222 2.7, 5.14 0.56
AXB10/PgnJ m 3.14 0.664   3 0.383 0.211 2.75, 3.91 -0.53
AXB12/PgnJ m 3.33 0.664   8 0.235 0.2 2.07, 3.93 -0.34
AXB13/PgnJ m 3.14 0.48   8 0.17 0.153 2.32, 3.82 -0.53
AXB15/PgnJ m 2.73 0.963   7 0.364 0.353 1.35, 3.86 -0.93
AXB19a/PgnJ m 2.45 0.528   4 0.264 0.215 2.04, 3.21 -1.2
AXB19/PgnJ m 3.85 2.19   15 0.565 0.568 1.97, 9.63 0.16
AXB1/PgnJ m 4.28 1.89   8 0.667 0.441 2.44, 8.7 0.58
AXB23/PgnJ m 2.29 0.672   4 0.336 0.293 1.91, 3.3 -1.36
AXB24/PgnJ m 3.11 0.567   6 0.231 0.182 2.48, 3.88 -0.56
AXB2/PgnJ m 3.63 0.546   8 0.193 0.15 2.7, 4.39 -0.05
AXB4/PgnJ m 2.86 0.493   4 0.246 0.172 2.32, 3.51 -0.8
AXB5/PgnJ m 2.92 0.678   8 0.24 0.233 2.09, 4.15 -0.74
AXB6/PgnJ m 3.98 1.38   9 0.459 0.346 2.49, 6.39 0.29
AXB8/PgnJ m 4.11 1.51   7 0.572 0.368 1.92, 7.02 0.42
B6cC3-1/KccJ m 3.91 0.512   7 0.193 0.131 3.46, 4.84 0.22
BALB/cJ m 4.07 0.541   12 0.156 0.133 3.01, 4.89 0.38
BTBR T+ Itpr3tf/J m 4.67 1.05   8 0.371 0.225 2.81, 5.73 0.96
BUB/BnJ m 3.4 2.02   3 1.17 0.595 2.06, 5.72 -0.28
BXA12/PgnJ m 4.93 0.937   7 0.354 0.19 3.93, 6.68 1.22
BXA13/PgnJ m 3.54 1.84   10 0.581 0.52 1.58, 6.4 -0.14
BXA14/PgnJ m 4.23 3.02   10 0.954 0.713 2.1, 11.6 0.53
BXA16/PgnJ m 2.05 0.446   7 0.169 0.218 1.45, 2.64 -1.59
BXA1/PgnJ m 3.54 0.425   3 0.246 0.12 3.12, 3.97 -0.14
BXA24/PgnJ m 3.72 0.749   6 0.306 0.201 2.77, 4.98 0.04
BXA25/PgnJ m 5.73 1.9   8 0.67 0.331 3.31, 8.32 2.0
BXA26/PgnJ m 3.02 0.967   8 0.342 0.32 2.07, 4.7 -0.65
BXA2/PgnJ m 3.06 0.647   8 0.229 0.211 2.25, 4.1 -0.61
BXA4/PgnJ m 3.02 1.29   8 0.455 0.426 1.29, 4.59 -0.65
BXA7/PgnJ m 3.45 0.828   8 0.293 0.24 2.21, 4.46 -0.23
BXA8/PgnJ m 4.3 1.76   8 0.624 0.41 2.6, 8.51 0.6
BXD11/TyJ m 2.26 0.314   5 0.141 0.139 1.92, 2.78 -1.39
BXD12/TyJ m 3.05 1.72   8 0.608 0.564 1.59, 5.79 -0.62
BXD13/TyJ m 4.68 0.898   4 0.449 0.192 3.75, 5.82 0.97
BXD14/TyJ m 2.51 1.03   8 0.363 0.409 1.52, 4.73 -1.14
BXD15/TyJ m 2.37 0.524   6 0.214 0.221 1.37, 2.85 -1.28
BXD16/TyJ m 4.8 0.959   6 0.391 0.2 3.49, 5.92 1.09
BXD18/TyJ m 3.78 0.869   7 0.329 0.23 2.75, 4.89 0.1
BXD19/TyJ m 3.3 0.652   7 0.247 0.198 2.32, 4.19 -0.37
BXD1/TyJ m 3.9 0.889   7 0.336 0.228 2.55, 5.2 0.21
BXD20/TyJ m 2.67 0.521   8 0.184 0.195 1.79, 3.45 -0.99
BXD21/TyJ m 4.43 0.81   6 0.331 0.183 2.83, 5.15 0.73
BXD24/TyJ m 4.68 1.43   4 0.717 0.306 2.97, 6.46 0.97
BXD27/TyJ m 3.04 1.23   8 0.436 0.406 1.46, 4.42 -0.63
BXD28/TyJ m 2.93 0.794   4 0.397 0.271 2.26, 4.06 -0.73
BXD29-Tlr4lps-2J/J m 4.26 1.33   7 0.502 0.311 3.03, 6.56 0.56
BXD2/TyJ m 3.0 0.822   4 0.411 0.274 2.28, 4.17 -0.67
BXD31/TyJ m 3.02 0.698   4 0.349 0.231 2.21, 3.85 -0.65
BXD32/TyJ m 3.49 0.882   5 0.395 0.253 2.11, 4.33 -0.19
BXD33/TyJ m 2.02 0.958   3 0.553 0.473 1.35, 3.12 -1.62
BXD34/TyJ m 2.82 0.873   8 0.309 0.309 1.68, 4.38 -0.84
BXD36/TyJ m 2.84 0.659   8 0.233 0.232 1.87, 3.69 -0.82
BXD38/TyJ m 2.51 0.473   8 0.167 0.188 1.99, 3.32 -1.14
BXD39/TyJ m 3.22 1.13   9 0.377 0.352 2.0, 5.35 -0.45
BXD40/TyJ m 3.05 0.524   8 0.185 0.172 2.52, 4.11 -0.62
BXD42/TyJ m 4.2 1.19   9 0.396 0.283 2.2, 5.85 0.5
BXD5/TyJ m 2.13 0.483   7 0.183 0.226 1.16, 2.7 -1.51
BXD6/TyJ m 3.52 0.899   7 0.34 0.255 2.54, 5.17 -0.16
BXD8/TyJ m 2.33 0.608   8 0.215 0.26 1.59, 3.41 -1.32
BXD9/TyJ m 5.05 2.04   8 0.722 0.405 2.85, 9.18 1.33
BXH10/TyJ m 3.33 0.878   10 0.278 0.264 2.03, 4.35 -0.34
BXH14/TyJ m 3.94 0.897   9 0.299 0.228 2.34, 5.31 0.25
BXH19/TyJ m 3.49 1.69   14 0.453 0.485 1.66, 8.37 -0.19
BXH20/KccJ m 4.19 0.763   6 0.311 0.182 3.39, 5.16 0.49
BXH22/KccJ m 3.19 0.876   9 0.292 0.274 1.97, 4.98 -0.48
BXH2/TyJ m 2.61 0.657   15 0.17 0.252 1.73, 3.89 -1.05
BXH4/TyJ m 3.79 0.63   7 0.238 0.166 3.12, 4.65 0.1
BXH6/TyJ m 4.02 2.86   8 1.01 0.713 2.02, 10.8 0.33
BXH7/TyJ m 2.04 0.964   3 0.556 0.472 1.39, 3.15 -1.6
BXH8/TyJ m 2.75 0.818   6 0.334 0.297 2.05, 4.29 -0.91
BXH9/TyJ m 6.49 2.82   5 1.26 0.435 3.0, 9.63 2.74
C3H/HeJ m 5.58 2.84   8 1.0 0.508 3.01, 11.3 1.85
C57BL/6J m 4.04 1.1   12 0.318 0.272 2.87, 6.28 0.35
C57L/J m 7.7 1.43   8 0.504 0.185 6.11, 10.1 3.92
C58/J m 4.93 2.07   8 0.732 0.42 2.53, 8.05 1.22
CAST/EiJ m 5.21 1.66   3 0.957 0.318 3.31, 6.38 1.49
CBA/J m 3.18 0.496   11 0.15 0.156 2.05, 3.89 -0.49
CE/J m 2.55 0.941   4 0.47 0.369 1.45, 3.69 -1.1
DBA/2J m 3.93 2.14   12 0.619 0.545 2.33, 9.57 0.24
FVB/NJ m 5.36 1.22   12 0.353 0.228 3.66, 8.45 1.64
KK/HlJ m 3.79 1.56   7 0.591 0.413 2.7, 7.27 0.1
LG/J m 5.09 0.604   3 0.349 0.119 4.72, 5.79 1.37
LP/J m 2.72 0.655   11 0.198 0.241 1.81, 3.52 -0.94
MA/MyJ m 4.44 0.901   4 0.451 0.203 3.22, 5.37 0.74
NOD/ShiLtJ m 4.2 1.46   8 0.517 0.348 2.45, 6.08 0.5
NON/ShiLtJ m 5.65 0.786   7 0.297 0.139 4.49, 6.95 1.92
NZB/BlNJ m 4.34 1.13   7 0.426 0.26 2.96, 5.78 0.64
NZW/LacJ m 3.78 0.782   4 0.391 0.207 3.15, 4.76 0.1
PL/J m 4.92 0.502   4 0.251 0.102 4.48, 5.46 1.21
SEA/GnJ m 3.74 2.07   7 0.783 0.554 2.15, 8.06 0.06
SM/J m 4.37 1.86   16 0.466 0.426 1.78, 8.87 0.67
SWR/J m 4.24 1.74   11 0.525 0.411 2.55, 8.16 0.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 2.84 0.6631 4.1423 1.5377
A/J m 3.144 0.5931 4.3088 1.9792
AKR/J m 4.2575 0.4689 5.1784 3.3366
AXB10/PgnJ m 3.1433 0.7657 4.6471 1.6395
AXB12/PgnJ m 3.325 0.4689 4.2459 2.4041
AXB13/PgnJ m 3.1375 0.4689 4.0584 2.2166
AXB15/PgnJ m 2.7286 0.5013 3.713 1.7441
AXB19a/PgnJ m 2.4525 0.6631 3.7548 1.1502
AXB19/PgnJ m 3.8513 0.3424 4.5239 3.1788
AXB1/PgnJ m 4.28 0.4689 5.2009 3.3591
AXB23/PgnJ m 2.295 0.6631 3.5973 0.9927
AXB24/PgnJ m 3.11 0.5414 4.1733 2.0467
AXB2/PgnJ m 3.6325 0.4689 4.5534 2.7116
AXB4/PgnJ m 2.8575 0.6631 4.1598 1.5552
AXB5/PgnJ m 2.9163 0.4689 3.8371 1.9954
AXB6/PgnJ m 3.98 0.4421 4.8482 3.1118
AXB8/PgnJ m 4.1114 0.5013 5.0959 3.127
B6cC3-1/KccJ m 3.9143 0.5013 4.8988 2.9298
BALB/cJ m 4.0667 0.3828 4.8186 3.3148
BTBR T+ Itpr3tf/J m 4.6675 0.4689 5.5884 3.7466
BUB/BnJ m 3.3967 0.7657 4.9005 1.8929
BXA12/PgnJ m 4.9257 0.5013 5.9102 3.9412
BXA13/PgnJ m 3.536 0.4194 4.3597 2.7123
BXA14/PgnJ m 4.228 0.4194 5.0517 3.4043
BXA16/PgnJ m 2.0457 0.5013 3.0302 1.0612
BXA1/PgnJ m 3.5367 0.7657 5.0405 2.0329
BXA24/PgnJ m 3.7217 0.5414 4.785 2.6583
BXA25/PgnJ m 5.7288 0.4689 6.6496 4.8079
BXA26/PgnJ m 3.0238 0.4689 3.9446 2.1029
BXA2/PgnJ m 3.0637 0.4689 3.9846 2.1429
BXA4/PgnJ m 3.0175 0.4689 3.9384 2.0966
BXA7/PgnJ m 3.4525 0.4689 4.3734 2.5316
BXA8/PgnJ m 4.305 0.4689 5.2259 3.3841
BXD11/TyJ m 2.264 0.5931 3.4288 1.0992
BXD12/TyJ m 3.0475 0.4689 3.9684 2.1266
BXD13/TyJ m 4.6775 0.6631 5.9798 3.3752
BXD14/TyJ m 2.5138 0.4689 3.4346 1.5929
BXD15/TyJ m 2.3667 0.5414 3.43 1.3033
BXD16/TyJ m 4.8017 0.5414 5.865 3.7383
BXD18/TyJ m 3.7757 0.5013 4.7602 2.7912
BXD19/TyJ m 3.2957 0.5013 4.2802 2.3112
BXD1/TyJ m 3.9 0.5013 4.8845 2.9155
BXD20/TyJ m 2.6687 0.4689 3.5896 1.7479
BXD21/TyJ m 4.4267 0.5414 5.49 3.3633
BXD24/TyJ m 4.68 0.6631 5.9823 3.3777
BXD27/TyJ m 3.0388 0.4689 3.9596 2.1179
BXD28/TyJ m 2.9275 0.6631 4.2298 1.6252
BXD29-Tlr4lps-2J/J m 4.2643 0.5013 5.2488 3.2798
BXD2/TyJ m 3.0 0.6631 4.3023 1.6977
BXD31/TyJ m 3.025 0.6631 4.3273 1.7227
BXD32/TyJ m 3.492 0.5931 4.6568 2.3272
BXD33/TyJ m 2.0233 0.7657 3.5271 0.5195
BXD34/TyJ m 2.8212 0.4689 3.7421 1.9004
BXD36/TyJ m 2.8412 0.4689 3.7621 1.9204
BXD38/TyJ m 2.5125 0.4689 3.4334 1.5916
BXD39/TyJ m 3.2156 0.4421 4.0838 2.3473
BXD40/TyJ m 3.0488 0.4689 3.9696 2.1279
BXD42/TyJ m 4.2022 0.4421 5.0704 3.334
BXD5/TyJ m 2.1343 0.5013 3.1188 1.1498
BXD6/TyJ m 3.5214 0.5013 4.5059 2.537
BXD8/TyJ m 2.3338 0.4689 3.2546 1.4129
BXD9/TyJ m 5.0475 0.4689 5.9684 4.1266
BXH10/TyJ m 3.332 0.4194 4.1557 2.5083
BXH14/TyJ m 3.9367 0.4421 4.8049 3.0685
BXH19/TyJ m 3.495 0.3544 4.1911 2.7989
BXH20/KccJ m 4.1883 0.5414 5.2517 3.125
BXH22/KccJ m 3.1933 0.4421 4.0615 2.3251
BXH2/TyJ m 2.6113 0.3424 3.2839 1.9388
BXH4/TyJ m 3.79 0.5013 4.7745 2.8055
BXH6/TyJ m 4.0188 0.4689 4.9396 3.0979
BXH7/TyJ m 2.0433 0.7657 3.5471 0.5395
BXH8/TyJ m 2.75 0.5414 3.8133 1.6867
BXH9/TyJ m 6.494 0.5931 7.6588 5.3292
C3H/HeJ m 5.5825 0.4689 6.5034 4.6616
C57BL/6J m 4.0433 0.3828 4.7952 3.2914
C57L/J m 7.705 0.4689 8.6259 6.7841
C58/J m 4.93 0.4689 5.8509 4.0091
CAST/EiJ m 5.2067 0.7657 6.7105 3.7029
CBA/J m 3.1773 0.3999 3.9626 2.3919
CE/J m 2.55 0.6631 3.8523 1.2477
DBA/2J m 3.9342 0.3828 4.6861 3.1823
FVB/NJ m 5.3625 0.3828 6.1144 4.6106
KK/HlJ m 3.7914 0.5013 4.7759 2.807
LG/J m 5.0933 0.7657 6.5971 3.5895
LP/J m 2.72 0.3999 3.5053 1.9347
MA/MyJ m 4.44 0.6631 5.7423 3.1377
NOD/ShiLtJ m 4.2 0.4689 5.1209 3.2791
NON/ShiLtJ m 5.6471 0.5013 6.6316 4.6627
NZB/BlNJ m 4.3414 0.5013 5.3259 3.357
NZW/LacJ m 3.78 0.6631 5.0823 2.4777
PL/J m 4.9225 0.6631 6.2248 3.6202
SEA/GnJ m 3.7371 0.5013 4.7216 2.7527
SM/J m 4.3731 0.3316 5.0243 3.722
SWR/J m 4.2418 0.3999 5.0271 3.4565




  GWAS USING LINEAR MIXED MODELS