Project measure / variable:   HMDPpheno4   ftr_pre_vel

ID, description, units MPD:46811   ftr_pre_vel   fear training, velocity, day 1   [cm/s]  pre-stimulus  
Data set, strains HMDPpheno4   HMDP w/par   94 strains     sex: m     age: 10wks
Procedure fear conditioning test
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

HMDPpheno4 - fear training, velocity, day 1 pre-stimulus



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested94 strains
Mean of the strain means5.53   cm/s
Median of the strain means5.55   cm/s
SD of the strain means± 1.10
Coefficient of variation (CV)0.199
Min–max range of strain means3.15   –   10.6   cm/s
Mean sample size per strain7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 93 788.7925 8.4816 4.6934 < 0.0001
Residuals 593 1071.6311 1.8071


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 5.99 0.558   4 0.279 0.0931 5.52, 6.8 0.42
A/J m 4.27 0.872   5 0.39 0.204 3.03, 5.19 -1.15
AKR/J m 5.99 1.16   8 0.41 0.194 3.69, 7.39 0.42
AXB10/PgnJ m 5.28 1.66   3 0.96 0.315 3.51, 6.81 -0.23
AXB12/PgnJ m 4.18 0.83   8 0.293 0.199 3.16, 5.27 -1.23
AXB13/PgnJ m 4.1 0.822   8 0.291 0.201 2.93, 5.18 -1.3
AXB15/PgnJ m 5.61 1.48   7 0.56 0.264 3.26, 7.09 0.07
AXB19a/PgnJ m 4.98 1.13   4 0.563 0.226 3.59, 6.35 -0.5
AXB19/PgnJ m 4.51 0.944   15 0.244 0.209 2.47, 5.73 -0.93
AXB1/PgnJ m 5.02 0.604   8 0.213 0.12 4.48, 6.21 -0.46
AXB23/PgnJ m 5.19 0.769   4 0.385 0.148 4.38, 6.23 -0.31
AXB24/PgnJ m 4.71 0.825   6 0.337 0.175 3.21, 5.55 -0.75
AXB2/PgnJ m 5.35 0.605   8 0.214 0.113 4.23, 6.05 -0.16
AXB4/PgnJ m 4.11 1.19   4 0.597 0.291 3.34, 5.87 -1.29
AXB5/PgnJ m 4.94 1.35   8 0.478 0.273 3.24, 6.62 -0.54
AXB6/PgnJ m 5.93 1.5   9 0.5 0.253 3.48, 8.71 0.37
AXB8/PgnJ m 6.28 0.938   7 0.355 0.149 5.04, 7.29 0.68
B6cC3-1/KccJ m 5.76 0.384   7 0.145 0.0666 5.32, 6.28 0.21
BALB/cJ m 6.87 1.12   12 0.323 0.163 4.52, 8.19 1.22
BTBR T+ Itpr3tf/J m 6.78 1.37   8 0.486 0.203 4.58, 8.88 1.14
BUB/BnJ m 5.71 0.652   3 0.376 0.114 5.28, 6.46 0.17
BXA12/PgnJ m 7.07 1.2   7 0.453 0.169 6.08, 9.45 1.4
BXA13/PgnJ m 6.0 2.49   10 0.787 0.415 2.67, 10.0 0.43
BXA14/PgnJ m 6.48 2.92   10 0.924 0.451 4.21, 12.0 0.87
BXA16/PgnJ m 4.84 0.497   7 0.188 0.103 3.87, 5.34 -0.63
BXA1/PgnJ m 6.16 0.641   3 0.37 0.104 5.47, 6.74 0.58
BXA24/PgnJ m 6.09 0.646   6 0.264 0.106 5.62, 7.33 0.51
BXA25/PgnJ m 5.03 1.53   8 0.539 0.303 3.33, 8.27 -0.45
BXA26/PgnJ m 5.21 1.33   8 0.471 0.256 3.43, 7.04 -0.29
BXA2/PgnJ m 5.77 0.832   8 0.294 0.144 4.69, 7.07 0.22
BXA4/PgnJ m 4.95 1.56   8 0.551 0.315 2.78, 7.29 -0.53
BXA7/PgnJ m 6.51 0.836   8 0.295 0.128 4.93, 7.41 0.89
BXA8/PgnJ m 5.78 0.915   8 0.323 0.158 4.56, 6.93 0.23
BXD11/TyJ m 4.57 0.695   5 0.311 0.152 3.69, 5.31 -0.87
BXD12/TyJ m 4.84 1.29   8 0.455 0.266 2.32, 6.39 -0.63
BXD13/TyJ m 5.26 0.88   4 0.44 0.167 4.61, 6.56 -0.24
BXD14/TyJ m 4.86 0.638   8 0.226 0.131 3.4, 5.45 -0.61
BXD15/TyJ m 3.15 1.07   6 0.435 0.338 1.9, 4.4 -2.17
BXD16/TyJ m 6.32 1.11   6 0.453 0.176 4.46, 7.33 0.72
BXD18/TyJ m 6.2 1.26   7 0.475 0.203 4.65, 7.97 0.61
BXD19/TyJ m 4.45 0.742   7 0.28 0.167 2.83, 5.03 -0.98
BXD1/TyJ m 6.41 1.02   7 0.387 0.16 4.59, 7.48 0.8
BXD20/TyJ m 4.97 0.948   8 0.335 0.191 2.95, 5.95 -0.51
BXD21/TyJ m 5.16 1.48   6 0.606 0.288 3.48, 7.48 -0.34
BXD24/TyJ m 4.12 0.883   4 0.442 0.215 2.98, 4.84 -1.28
BXD27/TyJ m 4.74 1.38   8 0.489 0.292 3.68, 7.81 -0.72
BXD28/TyJ m 3.83 1.06   4 0.529 0.276 2.75, 5.13 -1.55
BXD29-Tlr4lps-2J/J m 6.62 0.807   7 0.305 0.122 5.42, 7.56 0.99
BXD2/TyJ m 5.61 0.461   4 0.23 0.0822 5.21, 6.25 0.07
BXD31/TyJ m 5.16 1.7   4 0.852 0.33 3.96, 7.66 -0.34
BXD32/TyJ m 6.18 1.05   5 0.468 0.169 4.6, 7.5 0.59
BXD33/TyJ m 3.76 1.45   3 0.838 0.386 2.92, 5.44 -1.61
BXD34/TyJ m 4.56 0.962   8 0.34 0.211 2.58, 5.62 -0.88
BXD36/TyJ m 4.48 0.795   8 0.281 0.177 3.17, 5.29 -0.95
BXD38/TyJ m 4.34 0.564   8 0.199 0.13 3.32, 5.17 -1.08
BXD39/TyJ m 5.93 1.24   9 0.414 0.209 3.56, 7.9 0.37
BXD40/TyJ m 5.65 1.16   8 0.411 0.205 4.43, 7.98 0.11
BXD42/TyJ m 5.7 2.12   9 0.707 0.372 2.65, 8.83 0.16
BXD5/TyJ m 4.42 0.313   7 0.118 0.071 3.84, 4.78 -1.01
BXD6/TyJ m 5.91 0.801   7 0.303 0.136 4.42, 6.84 0.35
BXD8/TyJ m 5.09 0.613   8 0.217 0.12 4.23, 6.17 -0.4
BXD9/TyJ m 6.17 1.16   8 0.409 0.187 4.42, 7.8 0.58
BXH10/TyJ m 4.88 2.18   10 0.689 0.446 1.7, 7.82 -0.59
BXH14/TyJ m 5.06 1.44   9 0.479 0.284 3.18, 7.82 -0.43
BXH19/TyJ m 5.9 2.48   14 0.662 0.42 3.07, 13.8 0.34
BXH20/KccJ m 7.43 0.736   6 0.3 0.099 6.7, 8.27 1.73
BXH22/KccJ m 5.23 2.13   9 0.709 0.407 1.5, 8.13 -0.27
BXH2/TyJ m 4.51 0.97   15 0.25 0.215 2.77, 5.72 -0.93
BXH4/TyJ m 6.81 1.18   7 0.445 0.173 4.61, 8.02 1.17
BXH6/TyJ m 6.16 2.1   8 0.743 0.341 2.75, 8.48 0.58
BXH7/TyJ m 4.15 0.894   3 0.516 0.215 3.58, 5.18 -1.26
BXH8/TyJ m 4.32 0.65   6 0.266 0.151 3.2, 5.17 -1.1
BXH9/TyJ m 7.68 1.78   5 0.796 0.232 6.05, 10.5 1.96
C3H/HeJ m 5.19 1.41   8 0.497 0.271 4.12, 8.2 -0.31
C57BL/6J m 5.72 1.24   12 0.357 0.216 3.69, 8.09 0.17
C57L/J m 10.6 1.52   8 0.536 0.143 9.04, 13.1 4.62
C58/J m 6.16 1.85   8 0.656 0.301 3.61, 9.59 0.58
CAST/EiJ m 6.07 0.394   3 0.228 0.0649 5.65, 6.43 0.49
CBA/J m 5.55 0.809   11 0.244 0.146 4.77, 7.11 0.02
CE/J m 4.73 1.13   4 0.566 0.239 3.76, 6.34 -0.73
DBA/2J m 5.94 1.26   12 0.363 0.212 3.62, 8.65 0.38
FVB/NJ m 6.39 0.935   12 0.27 0.146 4.08, 7.45 0.79
KK/HlJ m 4.59 1.89   7 0.713 0.412 1.82, 6.62 -0.85
LG/J m 6.7 0.685   3 0.396 0.102 6.0, 7.37 1.07
LP/J m 5.52 1.28   11 0.386 0.232 3.84, 8.49 -0.01
MA/MyJ m 4.38 2.2   4 1.1 0.503 2.36, 6.32 -1.05
NOD/ShiLtJ m 7.17 0.575   8 0.203 0.0802 6.36, 8.03 1.5
NON/ShiLtJ m 8.65 1.12   7 0.424 0.13 7.07, 10.3 2.84
NZB/BlNJ m 4.08 1.21   7 0.458 0.297 2.17, 5.75 -1.32
NZW/LacJ m 5.74 0.826   4 0.413 0.144 4.88, 6.61 0.19
PL/J m 5.56 0.668   4 0.334 0.12 5.17, 6.56 0.03
SEA/GnJ m 6.13 2.61   7 0.985 0.425 2.87, 11.5 0.55
SM/J m 6.56 1.59   16 0.397 0.242 3.75, 9.28 0.94
SWR/J m 6.18 1.53   11 0.46 0.247 2.08, 7.82 0.59


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 5.9925 0.6721 7.3126 4.6724
A/J m 4.272 0.6012 5.4527 3.0913
AKR/J m 5.9925 0.4753 6.9259 5.0591
AXB10/PgnJ m 5.28 0.7761 6.8043 3.7557
AXB12/PgnJ m 4.18 0.4753 5.1134 3.2466
AXB13/PgnJ m 4.0975 0.4753 5.0309 3.1641
AXB15/PgnJ m 5.6143 0.5081 6.6122 4.6164
AXB19a/PgnJ m 4.985 0.6721 6.3051 3.6649
AXB19/PgnJ m 4.5107 0.3471 5.1924 3.829
AXB1/PgnJ m 5.0212 0.4753 5.9547 4.0878
AXB23/PgnJ m 5.19 0.6721 6.5101 3.8699
AXB24/PgnJ m 4.7133 0.5488 5.7912 3.6355
AXB2/PgnJ m 5.3487 0.4753 6.2822 4.4153
AXB4/PgnJ m 4.11 0.6721 5.4301 2.7899
AXB5/PgnJ m 4.9413 0.4753 5.8747 4.0078
AXB6/PgnJ m 5.9344 0.4481 6.8145 5.0544
AXB8/PgnJ m 6.28 0.5081 7.2779 5.2821
B6cC3-1/KccJ m 5.7643 0.5081 6.7622 4.7664
BALB/cJ m 6.8733 0.3881 7.6355 6.1112
BTBR T+ Itpr3tf/J m 6.7762 0.4753 7.7097 5.8428
BUB/BnJ m 5.71 0.7761 7.2343 4.1857
BXA12/PgnJ m 7.0743 0.5081 8.0722 6.0764
BXA13/PgnJ m 6.002 0.4251 6.8369 5.1671
BXA14/PgnJ m 6.481 0.4251 7.3159 5.6461
BXA16/PgnJ m 4.8443 0.5081 5.8422 3.8464
BXA1/PgnJ m 6.1567 0.7761 7.681 4.6324
BXA24/PgnJ m 6.095 0.5488 7.1728 5.0172
BXA25/PgnJ m 5.0325 0.4753 5.9659 4.0991
BXA26/PgnJ m 5.205 0.4753 6.1384 4.2716
BXA2/PgnJ m 5.7725 0.4753 6.7059 4.8391
BXA4/PgnJ m 4.9538 0.4753 5.8872 4.0203
BXA7/PgnJ m 6.5113 0.4753 7.4447 5.5778
BXA8/PgnJ m 5.7838 0.4753 6.7172 4.8503
BXD11/TyJ m 4.572 0.6012 5.7527 3.3913
BXD12/TyJ m 4.8375 0.4753 5.7709 3.9041
BXD13/TyJ m 5.265 0.6721 6.5851 3.9449
BXD14/TyJ m 4.8563 0.4753 5.7897 3.9228
BXD15/TyJ m 3.155 0.5488 4.2328 2.0772
BXD16/TyJ m 6.315 0.5488 7.3928 5.2372
BXD18/TyJ m 6.1957 0.5081 7.1936 5.1978
BXD19/TyJ m 4.4529 0.5081 5.4507 3.455
BXD1/TyJ m 6.4114 0.5081 7.4093 5.4135
BXD20/TyJ m 4.9662 0.4753 5.8997 4.0328
BXD21/TyJ m 5.1567 0.5488 6.2345 4.0788
BXD24/TyJ m 4.115 0.6721 5.4351 2.7949
BXD27/TyJ m 4.735 0.4753 5.6684 3.8016
BXD28/TyJ m 3.8275 0.6721 5.1476 2.5074
BXD29-Tlr4lps-2J/J m 6.6171 0.5081 7.615 5.6193
BXD2/TyJ m 5.6075 0.6721 6.9276 4.2874
BXD31/TyJ m 5.1625 0.6721 6.4826 3.8424
BXD32/TyJ m 6.178 0.6012 7.3587 4.9973
BXD33/TyJ m 3.7633 0.7761 5.2876 2.239
BXD34/TyJ m 4.5612 0.4753 5.4947 3.6278
BXD36/TyJ m 4.4825 0.4753 5.4159 3.5491
BXD38/TyJ m 4.34 0.4753 5.2734 3.4066
BXD39/TyJ m 5.9278 0.4481 6.8078 5.0477
BXD40/TyJ m 5.6513 0.4753 6.5847 4.7178
BXD42/TyJ m 5.6989 0.4481 6.5789 4.8188
BXD5/TyJ m 4.4157 0.5081 5.4136 3.4178
BXD6/TyJ m 5.9086 0.5081 6.9065 4.9107
BXD8/TyJ m 5.0913 0.4753 6.0247 4.1578
BXD9/TyJ m 6.1738 0.4753 7.1072 5.2403
BXH10/TyJ m 4.882 0.4251 5.7169 4.0471
BXH14/TyJ m 5.0611 0.4481 5.9412 4.1811
BXH19/TyJ m 5.9007 0.3593 6.6063 5.1951
BXH20/KccJ m 7.4317 0.5488 8.5095 6.3538
BXH22/KccJ m 5.2278 0.4481 6.1078 4.3477
BXH2/TyJ m 4.5127 0.3471 5.1944 3.831
BXH4/TyJ m 6.81 0.5081 7.8079 5.8121
BXH6/TyJ m 6.1638 0.4753 7.0972 5.2303
BXH7/TyJ m 4.15 0.7761 5.6743 2.6257
BXH8/TyJ m 4.3183 0.5488 5.3962 3.2405
BXH9/TyJ m 7.676 0.6012 8.8567 6.4953
C3H/HeJ m 5.1938 0.4753 6.1272 4.2603
C57BL/6J m 5.7158 0.3881 6.478 4.9537
C57L/J m 10.6062 0.4753 11.5397 9.6728
C58/J m 6.1563 0.4753 7.0897 5.2228
CAST/EiJ m 6.0733 0.7761 7.5976 4.549
CBA/J m 5.5455 0.4053 6.3415 4.7494
CE/J m 4.7325 0.6721 6.0526 3.4124
DBA/2J m 5.9375 0.3881 6.6996 5.1754
FVB/NJ m 6.3925 0.3881 7.1546 5.6304
KK/HlJ m 4.5871 0.5081 5.585 3.5893
LG/J m 6.7 0.7761 8.2243 5.1757
LP/J m 5.5227 0.4053 6.3188 4.7267
MA/MyJ m 4.3825 0.6721 5.7026 3.0624
NOD/ShiLtJ m 7.1738 0.4753 8.1072 6.2403
NON/ShiLtJ m 8.6471 0.5081 9.645 7.6493
NZB/BlNJ m 4.0771 0.5081 5.075 3.0793
NZW/LacJ m 5.735 0.6721 7.0551 4.4149
PL/J m 5.5625 0.6721 6.8826 4.2424
SEA/GnJ m 6.1257 0.5081 7.1236 5.1278
SM/J m 6.5581 0.3361 7.2182 5.8981
SWR/J m 6.1818 0.4053 6.9779 5.3858




  GWAS USING LINEAR MIXED MODELS