Project measure / variable:   Tarantino1   rest_diff

ID, description, units MPD:45933   rest_diff   percentage of time resting, 30 min test   [%]  difference  
cocaine study
Data set, strains Tarantino1   inbred   45 strains     sex: m     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino1 - percentage of time resting, 30 min test difference



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested45 strains
Mean of the strain means23.9   %
Median of the strain means24.7   %
SD of the strain means± 12.1
Coefficient of variation (CV)0.503
Min–max range of strain means-1.61   –   55.5   %
Mean sample size per strain18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 44 111581.9661 2535.9538 13.401 < 0.0001
Residuals 793 150064.6188 189.2366


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 13.0 20.1   20 4.5 1.54 -8.87, 72.6 -0.91
A/J m 3.92 14.4   23 2.99 3.66 -14.3, 47.8 -1.66
AKR/J m 28.2 16.3   20 3.64 0.578 -7.95, 50.1 0.35
BALB/cByJ m -0.737 11.2   18 2.63 -15.2 -17.1, 29.4 -2.05
BTBR T+ Itpr3tf/J m 14.6 18.2   19 4.18 1.24 -5.98, 54.5 -0.78
BUB/BnJ m 18.0 17.8   17 4.33 0.992 -30.7, 39.8 -0.49
C3H/HeJ m 31.4 14.3   20 3.2 0.455 6.06, 55.8 0.62
C57BL/6J m 32.4 12.0   52 1.67 0.372 6.23, 65.2 0.7
C57BLKS/J m 29.0 20.1   20 4.5 0.692 -3.84, 61.2 0.42
C57BR/cdJ m 46.2 4.93   16 1.23 0.107 36.8, 53.3 1.85
C57L/J m 39.7 7.6   18 1.79 0.191 22.3, 49.2 1.31
C58/J m 32.7 9.29   16 2.32 0.284 14.2, 47.0 0.73
CBA/J m 28.7 13.4   20 2.99 0.466 -1.97, 52.9 0.39
CE/J m 25.5 10.0   18 2.36 0.393 8.84, 48.2 0.13
CZECHII/EiJ m 22.6 19.0   18 4.47 0.839 -7.38, 65.8 -0.11
DBA/2J m 15.5 17.4   18 4.09 1.12 -10.1, 45.5 -0.7
DDY/JclSidSeyFrkJ m 40.9 16.8   16 4.2 0.411 13.8, 65.6 1.41
FVB/NJ m 9.21 14.4   20 3.21 1.56 -16.9, 28.3 -1.22
I/LnJ m 46.1 8.02   15 2.07 0.174 33.7, 61.5 1.84
KK/HlJ m 26.7 14.7   15 3.8 0.551 4.67, 51.8 0.23
LG/J m -1.61 8.89   19 2.04 -5.53 -23.3, 18.9 -2.12
LP/J m 6.34 9.37   20 2.09 1.48 -4.9, 29.9 -1.46
MA/MyJ m 18.5 13.7   16 3.43 0.743 -8.21, 41.0 -0.45
MOLF/EiJ m 33.7 16.4   16 4.09 0.485 6.73, 61.3 0.81
MRL/MpJ m 21.7 11.3   19 2.6 0.523 -12.5, 34.4 -0.19
MSM/MsJ m 28.8 16.7   18 3.93 0.58 -6.83, 55.2 0.4
NOD/ShiLtJ m 17.6 8.18   19 1.88 0.464 0.29, 28.3 -0.53
NON/ShiLtJ m 30.7 11.9   20 2.66 0.388 10.9, 47.8 0.56
NOR/LtJ m 16.4 8.72   20 1.95 0.533 -11.4, 26.7 -0.63
NZB/BlNJ m 29.7 17.4   18 4.09 0.584 -0.12, 58.8 0.48
NZO/HlLtJ m 20.1 11.6   16 2.89 0.576 3.75, 43.5 -0.32
NZW/LacJ m 13.8 11.5   19 2.63 0.832 -4.17, 37.2 -0.84
PERA/EiJ m 21.4 10.5   15 2.71 0.49 9.36, 39.0 -0.21
P/J m 55.5 10.2   12 2.95 0.184 40.0, 70.3 2.62
PL/J m 31.8 14.4   19 3.3 0.452 5.12, 51.8 0.65
PWD/PhJ m 39.3 15.4   15 3.97 0.391 12.8, 64.7 1.27
RIIIS/J m 14.1 15.1   15 3.9 1.07 -13.0, 36.4 -0.82
SEA/GnJ m 26.7 12.2   15 3.16 0.458 -4.47, 40.8 0.23
SJL/J m 20.6 17.8   24 3.63 0.862 -10.2, 60.6 -0.28
SKIVE/EiJ m 28.2 11.1   18 2.61 0.393 11.2, 47.0 0.35
SM/J m 16.6 11.5   19 2.64 0.691 -3.16, 41.2 -0.61
SWR/J m 24.7 10.4   17 2.51 0.419 4.33, 46.9 0.06
TALLYHO/JngJ m 27.2 11.0   16 2.74 0.404 1.23, 46.5 0.27
WSB/EiJ m 18.7 20.3   17 4.93 1.09 -11.4, 58.5 -0.43
ZALENDE/EiJ m 13.3 7.3   17 1.77 0.55 3.21, 29.9 -0.88


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 13.0445 3.076 19.0826 7.0064
A/J m 3.9196 2.8684 9.5501 -1.711
AKR/J m 28.1725 3.076 34.2106 22.1344
BALB/cByJ m -0.7372 3.2424 5.6275 -7.1019
BTBR T+ Itpr3tf/J m 14.6305 3.1559 20.8255 8.4356
BUB/BnJ m 17.9853 3.3364 24.5345 11.4361
C3H/HeJ m 31.418 3.076 37.4561 25.3799
C57BL/6J m 32.4104 1.9077 36.155 28.6657
C57BLKS/J m 29.0375 3.076 35.0756 22.9994
C57BR/cdJ m 46.2375 3.4391 52.9883 39.4867
C57L/J m 39.7 3.2424 46.0647 33.3353
C58/J m 32.7 3.4391 39.4508 25.9492
CBA/J m 28.6865 3.076 34.7246 22.6484
CE/J m 25.4911 3.2424 31.8558 19.1264
CZECHII/EiJ m 22.6328 3.2424 28.9975 16.2681
DBA/2J m 15.4939 3.2424 21.8586 9.1292
DDY/JclSidSeyFrkJ m 40.8687 3.4391 47.6195 34.118
FVB/NJ m 9.206 3.076 15.2441 3.1679
I/LnJ m 46.0933 3.5519 53.0655 39.1212
KK/HlJ m 26.684 3.5519 33.6562 19.7118
LG/J m -1.6079 3.1559 4.587 -7.8028
LP/J m 6.342 3.076 12.3801 0.3039
MA/MyJ m 18.4569 3.4391 25.2077 11.7061
MOLF/EiJ m 33.7331 3.4391 40.4839 26.9823
MRL/MpJ m 21.7021 3.1559 27.897 15.5072
MSM/MsJ m 28.7828 3.2424 35.1475 22.4181
NOD/ShiLtJ m 17.6379 3.1559 23.8328 11.443
NON/ShiLtJ m 30.675 3.076 36.7131 24.6369
NOR/LtJ m 16.3615 3.076 22.3996 10.3234
NZB/BlNJ m 29.7317 3.2424 36.0964 23.367
NZO/HlLtJ m 20.0744 3.4391 26.8252 13.3236
NZW/LacJ m 13.7884 3.1559 19.9834 7.5935
PERA/EiJ m 21.4307 3.5519 28.4028 14.4585
P/J m 55.5167 3.9711 63.3118 47.7215
PL/J m 31.8068 3.1559 38.0018 25.6119
PWD/PhJ m 39.3133 3.5519 46.2855 32.3412
RIIIS/J m 14.0507 3.5519 21.0228 7.0785
SEA/GnJ m 26.6953 3.5519 33.6675 19.7232
SJL/J m 20.6137 2.808 26.1257 15.1018
SKIVE/EiJ m 28.1667 3.2424 34.5314 21.802
SM/J m 16.6458 3.1559 22.8407 10.4508
SWR/J m 24.71 3.3364 31.2592 18.1608
TALLYHO/JngJ m 27.1956 3.4391 33.9464 20.4448
WSB/EiJ m 18.6565 3.3364 25.2057 12.1073
ZALENDE/EiJ m 13.2694 3.3364 19.8186 6.7202




  GWAS USING LINEAR MIXED MODELS