Project measure / variable:   Tarantino1   rest_cocaine

ID, description, units MPD:45932   rest_cocaine   percentage of time resting, 30 min test   [%]  treated (day 3)  
cocaine study
Data set, strains Tarantino1   inbred   45 strains     sex: m     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino1 - percentage of time resting, 30 min test treated (day 3)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested45 strains
Mean of the strain means49.4   %
Median of the strain means48.3   %
SD of the strain means± 16.8
Coefficient of variation (CV)0.340
Min–max range of strain means10.6   –   84.3   %
Mean sample size per strain18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 44 223095.4337 5070.3508 22.1189 < 0.0001
Residuals 793 181780.277 229.2311


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 77.3 25.2   20 5.64 0.327 16.2, 99.8 1.66
A/J m 84.2 14.4   23 3.0 0.171 40.6, 96.2 2.07
AKR/J m 38.8 18.6   20 4.16 0.479 16.3, 81.0 -0.63
BALB/cByJ m 70.5 14.9   18 3.52 0.212 31.3, 92.6 1.26
BTBR T+ Itpr3tf/J m 66.0 21.2   19 4.86 0.321 25.6, 92.9 0.99
BUB/BnJ m 42.2 16.2   17 3.93 0.384 18.9, 80.8 -0.43
C3H/HeJ m 48.3 14.0   20 3.13 0.29 25.1, 73.7 -0.06
C57BL/6J m 38.6 12.5   52 1.73 0.323 15.1, 69.6 -0.64
C57BLKS/J m 51.5 22.6   20 5.06 0.439 19.4, 90.6 0.13
C57BR/cdJ m 10.6 4.61   16 1.15 0.436 3.8, 23.1 -2.31
C57L/J m 21.2 8.17   18 1.93 0.385 7.6, 40.7 -1.68
C58/J m 22.8 6.62   16 1.66 0.29 14.3, 35.0 -1.58
CBA/J m 45.1 14.7   20 3.29 0.325 20.8, 79.2 -0.26
CE/J m 40.4 10.6   18 2.5 0.263 18.7, 63.8 -0.54
CZECHII/EiJ m 57.8 19.6   18 4.63 0.34 17.3, 86.8 0.5
DBA/2J m 57.8 20.3   18 4.78 0.351 24.1, 93.9 0.5
DDY/JclSidSeyFrkJ m 34.5 17.9   16 4.47 0.519 12.2, 66.3 -0.89
FVB/NJ m 62.8 17.9   20 4.01 0.285 33.5, 92.7 0.8
I/LnJ m 20.0 5.6   15 1.45 0.281 11.2, 31.1 -1.75
KK/HlJ m 43.7 14.6   15 3.78 0.334 22.9, 69.5 -0.34
LG/J m 79.2 9.18   19 2.11 0.116 62.1, 92.0 1.78
LP/J m 84.3 11.5   20 2.58 0.137 57.0, 99.5 2.08
MA/MyJ m 49.3 16.5   16 4.13 0.336 25.5, 81.8 0.0
MOLF/EiJ m 44.4 16.9   16 4.23 0.381 18.2, 78.1 -0.3
MRL/MpJ m 44.1 15.0   19 3.43 0.339 15.5, 86.7 -0.31
MSM/MsJ m 50.9 17.8   18 4.2 0.35 24.0, 88.5 0.09
NOD/ShiLtJ m 43.2 7.42   19 1.7 0.172 26.9, 55.2 -0.37
NON/ShiLtJ m 39.2 14.2   20 3.17 0.362 19.6, 64.0 -0.61
NOR/LtJ m 47.9 11.6   20 2.59 0.242 31.4, 76.1 -0.09
NZB/BlNJ m 49.6 18.9   18 4.46 0.381 22.1, 81.0 0.01
NZO/HlLtJ m 65.6 13.0   16 3.24 0.198 40.6, 82.8 0.97
NZW/LacJ m 63.0 14.8   19 3.4 0.235 42.7, 96.7 0.81
PERA/EiJ m 64.2 10.7   15 2.77 0.167 44.9, 79.3 0.88
P/J m 14.5 3.39   12 0.98 0.233 9.4, 22.1 -2.08
PL/J m 35.4 13.5   19 3.1 0.381 17.7, 62.3 -0.83
PWD/PhJ m 45.8 16.6   15 4.29 0.363 21.3, 71.3 -0.21
RIIIS/J m 50.5 16.4   15 4.23 0.324 25.1, 75.7 0.07
SEA/GnJ m 46.1 15.2   15 3.93 0.329 30.8, 88.7 -0.2
SJL/J m 56.6 18.5   24 3.77 0.326 19.6, 88.9 0.43
SKIVE/EiJ m 43.4 12.9   18 3.05 0.298 23.2, 64.9 -0.36
SM/J m 48.8 10.8   19 2.48 0.221 23.3, 66.7 -0.03
SWR/J m 47.2 9.62   17 2.33 0.204 25.9, 66.1 -0.13
TALLYHO/JngJ m 50.0 12.0   16 3.0 0.24 27.7, 73.8 0.04
WSB/EiJ m 62.1 24.7   17 6.0 0.398 21.2, 92.8 0.76
ZALENDE/EiJ m 62.8 9.1   17 2.21 0.145 43.6, 74.6 0.8


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 77.255 3.3855 83.9006 70.6094
A/J m 84.1957 3.157 90.3927 77.9986
AKR/J m 38.785 3.3855 45.4306 32.1394
BALB/cByJ m 70.55 3.5686 77.5551 63.5449
BTBR T+ Itpr3tf/J m 66.0421 3.4734 72.8603 59.2239
BUB/BnJ m 42.2235 3.6721 49.4317 35.0154
C3H/HeJ m 48.3 3.3855 54.9456 41.6544
C57BL/6J m 38.5712 2.0996 42.6926 34.4497
C57BLKS/J m 51.525 3.3855 58.1706 44.8794
C57BR/cdJ m 10.5688 3.7851 17.9987 3.1388
C57L/J m 21.2389 3.5686 28.244 14.2338
C58/J m 22.7937 3.7851 30.2237 15.3638
CBA/J m 45.14 3.3855 51.7856 38.4944
CE/J m 40.3889 3.5686 47.394 33.3838
CZECHII/EiJ m 57.8278 3.5686 64.8328 50.8227
DBA/2J m 57.8389 3.5686 64.844 50.8338
DDY/JclSidSeyFrkJ m 34.4562 3.7851 41.8862 27.0263
FVB/NJ m 62.8 3.3855 69.4456 56.1544
I/LnJ m 19.9733 3.9092 27.647 12.2997
KK/HlJ m 43.7467 3.9092 51.4203 36.073
LG/J m 79.1684 3.4734 85.9866 72.3502
LP/J m 84.305 3.3855 90.9506 77.6594
MA/MyJ m 49.275 3.7851 56.705 41.845
MOLF/EiJ m 44.4312 3.7851 51.8612 37.0013
MRL/MpJ m 44.0684 3.4734 50.8866 37.2502
MSM/MsJ m 50.8722 3.5686 57.8773 43.8672
NOD/ShiLtJ m 43.1737 3.4734 49.9919 36.3555
NON/ShiLtJ m 39.21 3.3855 45.8556 32.5644
NOR/LtJ m 47.86 3.3855 54.5056 41.2144
NZB/BlNJ m 49.5944 3.5686 56.5995 42.5894
NZO/HlLtJ m 65.5562 3.7851 72.9862 58.1263
NZW/LacJ m 62.9737 3.4734 69.7919 56.1555
PERA/EiJ m 64.2133 3.9092 71.887 56.5397
P/J m 14.5417 4.3707 23.1211 5.9623
PL/J m 35.4053 3.4734 42.2235 28.587
PWD/PhJ m 45.78 3.9092 53.4537 38.1063
RIIIS/J m 50.52 3.9092 58.1937 42.8463
SEA/GnJ m 46.1467 3.9092 53.8203 38.473
SJL/J m 56.5833 3.0905 62.6499 50.5168
SKIVE/EiJ m 43.3611 3.5686 50.3662 36.356
SM/J m 48.8316 3.4734 55.6498 42.0134
SWR/J m 47.1882 3.6721 54.3964 39.9801
TALLYHO/JngJ m 50.0437 3.7851 57.4737 42.6138
WSB/EiJ m 62.1235 3.6721 69.3317 54.9154
ZALENDE/EiJ m 62.8471 3.6721 70.0552 55.6389




  GWAS USING LINEAR MIXED MODELS