Project measure / variable:   Tarantino1   rest_ctrl

ID, description, units MPD:45931   rest_ctrl   percentage of time resting, 30 min test   [%]  baseline (day 2)  
cocaine study
Data set, strains Tarantino1   inbred   45 strains     sex: m     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino1 - percentage of time resting, 30 min test baseline (day 2)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested45 strains
Mean of the strain means73.3   %
Median of the strain means72.8   %
SD of the strain means± 8.66
Coefficient of variation (CV)0.118
Min–max range of strain means55.5   –   90.7   %
Mean sample size per strain18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 44 59575.3532 1353.9853 38.9221 < 0.0001
Residuals 795 27655.6925 34.787


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 90.3 10.9   20 2.44 0.121 50.2, 98.3 1.96
A/J m 88.1 5.26   23 1.1 0.0597 77.1, 96.9 1.71
AKR/J m 67.0 4.99   20 1.12 0.0745 57.2, 76.1 -0.73
BALB/cByJ m 69.8 7.26   18 1.71 0.104 58.4, 87.3 -0.41
BTBR T+ Itpr3tf/J m 80.7 6.05   19 1.39 0.0749 70.2, 90.8 0.85
BUB/BnJ m 60.2 4.58   17 1.11 0.0761 50.1, 68.5 -1.52
C3H/HeJ m 79.7 2.81   20 0.628 0.0353 73.5, 87.9 0.74
C57BL/6J m 71.0 5.98   52 0.829 0.0842 60.1, 97.7 -0.27
C57BLKS/J m 80.6 3.45   20 0.772 0.0429 74.1, 87.5 0.84
C57BR/cdJ m 56.8 6.82   16 1.71 0.12 43.1, 65.8 -1.91
C57L/J m 60.9 5.17   18 1.22 0.0849 50.9, 69.8 -1.43
C58/J m 55.5 8.71   16 2.18 0.157 42.0, 71.6 -2.06
CBA/J m 73.8 3.91   20 0.875 0.053 62.2, 79.9 0.05
CE/J m 65.9 4.49   18 1.06 0.0682 56.8, 73.2 -0.86
CZECHII/EiJ m 80.4 9.42   18 2.22 0.117 60.6, 94.1 0.82
DBA/2J m 73.3 6.41   18 1.51 0.0874 64.6, 94.6 0.0
DDY/JclSidSeyFrkJ m 75.3 4.48   16 1.12 0.0595 68.2, 84.6 0.23
FVB/NJ m 72.0 7.62   20 1.7 0.106 61.7, 89.1 -0.15
I/LnJ m 66.1 5.56   15 1.44 0.0842 58.7, 76.5 -0.83
KK/HlJ m 70.4 7.5   15 1.94 0.106 58.2, 81.1 -0.34
LG/J m 77.6 6.66   19 1.53 0.0859 64.9, 91.1 0.49
LP/J m 90.7 5.27   20 1.18 0.0581 78.8, 98.2 2.01
MA/MyJ m 67.7 7.73   16 1.93 0.114 53.2, 84.5 -0.65
MOLF/EiJ m 78.1 5.58   16 1.4 0.0714 69.1, 86.6 0.55
MRL/MpJ m 65.8 5.39   19 1.24 0.0819 49.9, 74.2 -0.87
MSM/MsJ m 79.7 8.09   18 1.91 0.102 55.8, 91.1 0.74
NOD/ShiLtJ m 60.8 6.07   19 1.39 0.0998 51.1, 73.5 -1.45
NON/ShiLtJ m 69.9 4.89   20 1.09 0.07 60.9, 76.6 -0.4
NOR/LtJ m 64.2 6.23   20 1.39 0.0971 51.6, 75.6 -1.05
NZB/BlNJ m 79.3 4.36   18 1.03 0.0549 71.7, 85.6 0.69
NZO/HlLtJ m 85.6 4.83   16 1.21 0.0564 76.5, 91.0 1.42
NZW/LacJ m 76.8 7.26   19 1.66 0.0945 61.7, 92.5 0.4
PERA/EiJ m 85.7 2.8   15 0.724 0.0327 78.0, 90.0 1.43
P/J m 70.1 8.17   12 2.36 0.117 57.5, 84.8 -0.37
PL/J m 67.2 3.13   19 0.718 0.0465 61.3, 71.3 -0.71
PWD/PhJ m 85.1 4.06   15 1.05 0.0477 78.7, 91.2 1.36
RIIIS/J m 64.6 3.95   15 1.02 0.0612 58.1, 69.4 -1.01
SEA/GnJ m 72.8 4.69   16 1.17 0.0644 65.6, 84.3 -0.06
SJL/J m 77.2 4.88   24 0.997 0.0633 63.9, 85.8 0.45
SKIVE/EiJ m 71.4 4.07   19 0.933 0.057 65.9, 81.9 -0.22
SM/J m 65.5 3.27   19 0.75 0.0499 59.4, 70.6 -0.9
SWR/J m 71.9 3.01   17 0.729 0.0418 65.7, 77.9 -0.16
TALLYHO/JngJ m 77.2 4.28   16 1.07 0.0554 67.9, 82.6 0.45
WSB/EiJ m 80.8 8.51   17 2.06 0.105 66.0, 96.5 0.86
ZALENDE/EiJ m 76.1 4.03   17 0.978 0.053 66.9, 82.4 0.32


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 90.3 1.3188 92.8888 87.7112
A/J m 88.1174 1.2298 90.5315 85.7033
AKR/J m 66.965 1.3188 69.5538 64.3762
BALB/cByJ m 69.8167 1.3902 72.5455 67.0878
BTBR T+ Itpr3tf/J m 80.6895 1.3531 83.3456 78.0334
BUB/BnJ m 60.2 1.4305 63.008 57.392
C3H/HeJ m 79.71 1.3188 82.2988 77.1212
C57BL/6J m 70.9885 0.8179 72.594 69.3829
C57BLKS/J m 80.565 1.3188 83.1538 77.9762
C57BR/cdJ m 56.7937 1.4745 59.6881 53.8994
C57L/J m 60.9333 1.3902 63.6622 58.2045
C58/J m 55.4937 1.4745 58.3881 52.5994
CBA/J m 73.845 1.3188 76.4338 71.2562
CE/J m 65.8944 1.3902 68.6233 63.1656
CZECHII/EiJ m 80.4444 1.3902 83.1733 77.7156
DBA/2J m 73.3333 1.3902 76.0622 70.6045
DDY/JclSidSeyFrkJ m 75.3375 1.4745 78.2319 72.4431
FVB/NJ m 72.015 1.3188 74.6038 69.4262
I/LnJ m 66.06 1.5229 69.0493 63.0707
KK/HlJ m 70.44 1.5229 73.4293 67.4507
LG/J m 77.5526 1.3531 80.2087 74.8965
LP/J m 90.66 1.3188 93.2488 88.0712
MA/MyJ m 67.7125 1.4745 70.6069 64.8181
MOLF/EiJ m 78.1437 1.4745 81.0381 75.2494
MRL/MpJ m 65.7632 1.3531 68.4192 63.1071
MSM/MsJ m 79.6556 1.3902 82.3844 76.9267
NOD/ShiLtJ m 60.8105 1.3531 63.4666 58.1544
NON/ShiLtJ m 69.895 1.3188 72.4838 67.3062
NOR/LtJ m 64.23 1.3188 66.8188 61.6412
NZB/BlNJ m 79.3389 1.3902 82.0678 76.61
NZO/HlLtJ m 85.6313 1.4745 88.5256 82.7369
NZW/LacJ m 76.7632 1.3531 79.4192 74.1071
PERA/EiJ m 85.6533 1.5229 88.6427 82.664
P/J m 70.075 1.7026 73.4172 66.7328
PL/J m 67.2211 1.3531 69.8771 64.565
PWD/PhJ m 85.0667 1.5229 88.056 82.0773
RIIIS/J m 64.5533 1.5229 67.5427 61.564
SEA/GnJ m 72.8125 1.4745 75.7069 69.9181
SJL/J m 77.2083 1.2039 79.5716 74.8451
SKIVE/EiJ m 71.3789 1.3531 74.035 68.7229
SM/J m 65.4684 1.3531 68.1245 62.8123
SWR/J m 71.9118 1.4305 74.7197 69.1038
TALLYHO/JngJ m 77.2375 1.4745 80.1319 74.3431
WSB/EiJ m 80.7824 1.4305 83.5903 77.9744
ZALENDE/EiJ m 76.1294 1.4305 78.9374 73.3214




  GWAS USING LINEAR MIXED MODELS