Phenotype measure:   Tarantino1   vel_diff


  STRAIN COMPARISON PLOT
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Tarantino1 - average velocity, 30 min test difference



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested45 strains
Mean of the strain means3.10   cm/s
Median of the strain means3.32   cm/s
SD of the strain means± 3.39
Coefficient of variation (CV)1.09
Min–max range of strain means-4.31   –   12.8   cm/s
Mean sample size per strain18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 44 9015.6784 204.9018 7.8264 < 0.0001
Residuals 793 20761.4151 26.1809


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.49 2.3   20 0.514 1.55 -3.86, 6.18 -0.47
A/J m -2.34 17.2   23 3.58 -7.32 -58.4, 36.5 -1.6
AKR/J m 2.91 2.64   20 0.591 0.909 -2.54, 6.8 -0.06
BALB/cByJ m 3.27 4.05   18 0.955 1.24 -3.97, 8.96 0.05
BTBR T+ Itpr3tf/J m 0.377 2.03   19 0.465 5.38 -4.2, 4.01 -0.8
BUB/BnJ m -3.19 4.57   17 1.11 -1.43 -15.3, 1.91 -1.85
C3H/HeJ m 4.46 3.43   20 0.767 0.769 -1.82, 10.7 0.4
C57BL/6J m 2.38 3.66   52 0.507 1.54 -5.3, 11.5 -0.21
C57BLKS/J m 3.52 4.32   20 0.966 1.23 -4.13, 13.0 0.12
C57BR/cdJ m 6.64 5.18   16 1.29 0.78 -0.14, 19.7 1.04
C57L/J m 5.23 6.01   18 1.42 1.15 -5.37, 17.0 0.63
C58/J m 4.72 5.94   16 1.49 1.26 -4.84, 13.1 0.48
CBA/J m 2.26 2.89   20 0.647 1.28 -1.74, 9.67 -0.25
CE/J m 3.47 3.02   18 0.713 0.87 -2.75, 9.97 0.11
CZECHII/EiJ m 3.78 4.91   18 1.16 1.3 -3.04, 12.6 0.2
DBA/2J m 3.81 6.94   18 1.64 1.82 -20.0, 11.7 0.21
DDY/JclSidSeyFrkJ m 4.72 3.24   16 0.81 0.686 -4.21, 9.64 0.48
FVB/NJ m -3.83 3.93   20 0.878 -1.03 -11.5, 2.98 -2.04
I/LnJ m 7.33 4.46   15 1.15 0.608 -1.49, 14.0 1.25
KK/HlJ m 3.45 2.26   15 0.583 0.655 -0.01, 7.09 0.1
LG/J m -4.31 9.93   19 2.28 -2.3 -34.7, 7.62 -2.18
LP/J m 1.5 3.99   20 0.892 2.66 -6.17, 8.44 -0.47
MA/MyJ m 3.66 3.38   16 0.846 0.924 -1.47, 9.77 0.17
MOLF/EiJ m 3.32 4.13   16 1.03 1.25 -3.95, 10.9 0.07
MRL/MpJ m 2.35 3.72   19 0.854 1.59 -5.3, 8.88 -0.22
MSM/MsJ m 8.78 5.62   18 1.32 0.64 -7.5, 17.2 1.67
NOD/ShiLtJ m 4.06 4.42   19 1.02 1.09 -7.48, 11.1 0.28
NON/ShiLtJ m 1.83 2.85   20 0.637 1.56 -3.09, 7.84 -0.37
NOR/LtJ m 6.49 3.7   20 0.828 0.57 1.68, 17.5 1.0
NZB/BlNJ m 6.27 3.18   18 0.749 0.506 1.77, 15.2 0.93
NZO/HlLtJ m 3.55 2.53   16 0.634 0.715 0.09, 8.32 0.13
NZW/LacJ m 0.327 2.12   19 0.487 6.5 -3.69, 4.16 -0.82
PERA/EiJ m 1.33 2.42   15 0.624 1.82 -2.84, 4.37 -0.52
P/J m 2.67 3.4   12 0.98 1.27 -5.51, 7.19 -0.13
PL/J m 6.1 3.97   19 0.911 0.651 -0.81, 13.7 0.88
PWD/PhJ m 12.8 5.87   15 1.51 0.46 6.52, 25.0 2.86
RIIIS/J m 1.93 3.12   15 0.805 1.61 -2.2, 9.92 -0.34
SEA/GnJ m 3.35 2.85   15 0.736 0.851 -1.73, 8.44 0.07
SJL/J m 2.64 4.29   24 0.876 1.62 -7.31, 10.9 -0.14
SKIVE/EiJ m 10.9 6.6   18 1.55 0.607 -3.52, 19.7 2.3
SM/J m 0.253 3.07   19 0.704 12.1 -6.98, 5.76 -0.84
SWR/J m 0.0341 3.59   17 0.872 105.0 -8.0, 5.23 -0.9
TALLYHO/JngJ m 2.21 4.25   16 1.06 1.92 -4.35, 11.1 -0.26
WSB/EiJ m 4.61 4.89   17 1.19 1.06 -2.88, 11.4 0.45
ZALENDE/EiJ m -1.64 4.92   17 1.19 -2.99 -11.2, 6.48 -1.4


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.4875 1.1441 3.7334 -0.7584
A/J m -2.3439 1.0669 -0.2496 -4.4382
AKR/J m 2.906 1.1441 5.1519 0.6601
BALB/cByJ m 3.2672 1.206 5.6346 0.8998
BTBR T+ Itpr3tf/J m 0.3774 1.1739 2.6816 -1.9269
BUB/BnJ m -3.1859 1.241 -0.7499 -5.6219
C3H/HeJ m 4.462 1.1441 6.7079 2.2161
C57BL/6J m 2.3808 0.7096 3.7736 0.9879
C57BLKS/J m 3.519 1.1441 5.7649 1.2731
C57BR/cdJ m 6.6425 1.2792 9.1535 4.1315
C57L/J m 5.2306 1.206 7.5979 2.8632
C58/J m 4.7231 1.2792 7.2341 2.2121
CBA/J m 2.2605 1.1441 4.5064 0.0146
CE/J m 3.4739 1.206 5.8413 1.1065
CZECHII/EiJ m 3.785 1.206 6.1524 1.4176
DBA/2J m 3.8111 1.206 6.1785 1.4437
DDY/JclSidSeyFrkJ m 4.7213 1.2792 7.2322 2.2103
FVB/NJ m -3.8275 1.1441 -1.5816 -6.0734
I/LnJ m 7.332 1.3211 9.9253 4.7387
KK/HlJ m 3.4493 1.3211 6.0427 0.856
LG/J m -4.3126 1.1739 -2.0084 -6.6169
LP/J m 1.502 1.1441 3.7479 -0.7439
MA/MyJ m 3.6625 1.2792 6.1735 1.1515
MOLF/EiJ m 3.3156 1.2792 5.8266 0.8046
MRL/MpJ m 2.3474 1.1739 4.6516 0.0431
MSM/MsJ m 8.7828 1.206 11.1502 6.4154
NOD/ShiLtJ m 4.0574 1.1739 6.3616 1.7531
NON/ShiLtJ m 1.8285 1.1441 4.0744 -0.4174
NOR/LtJ m 6.49 1.1441 8.7359 4.2441
NZB/BlNJ m 6.2733 1.206 8.6407 3.906
NZO/HlLtJ m 3.5456 1.2792 6.0566 1.0346
NZW/LacJ m 0.3268 1.1739 2.6311 -1.9774
PERA/EiJ m 1.3293 1.3211 3.9227 -1.264
P/J m 2.6658 1.4771 5.5653 -0.2336
PL/J m 6.1005 1.1739 8.4048 3.7963
PWD/PhJ m 12.7627 1.3211 15.356 10.1693
RIIIS/J m 1.932 1.3211 4.5253 -0.6613
SEA/GnJ m 3.348 1.3211 5.9413 0.7547
SJL/J m 2.6446 1.0444 4.6948 0.5944
SKIVE/EiJ m 10.8733 1.206 13.2407 8.506
SM/J m 0.2532 1.1739 2.5574 -2.0511
SWR/J m 0.0341 1.241 2.4701 -2.4019
TALLYHO/JngJ m 2.2113 1.2792 4.7222 -0.2997
WSB/EiJ m 4.6106 1.241 7.0466 2.1746
ZALENDE/EiJ m -1.6447 1.241 0.7913 -4.0807




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.