Project measure / variable:   Tarantino1   vel_cocaine

ID, description, units MPD:45927   vel_cocaine   average velocity, 30 min test   [cm/s]  treated (day 3)  
cocaine study
Data set, strains Tarantino1   inbred   45 strains     sex: m     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino1 - average velocity, 30 min test treated (day 3)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested45 strains
Mean of the strain means34.5   cm/s
Median of the strain means33.6   cm/s
SD of the strain means± 6.91
Coefficient of variation (CV)0.200
Min–max range of strain means16.8   –   50.2   cm/s
Mean sample size per strain18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 44 38249.5762 869.3086 27.1293 < 0.0001
Residuals 793 25410.2033 32.0431


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 16.8 11.8   20 2.64 0.702 -2.56
A/J m 21.9 14.1   23 2.93 0.643 -1.82
AKR/J m 31.4 3.34   20 0.748 0.106 26.4, 37.0 -0.45
BALB/cByJ m 37.0 4.54   18 1.07 0.123 26.3, 44.1 0.36
BTBR T+ Itpr3tf/J m 26.7 4.28   19 0.981 0.16 16.9, 33.5 -1.13
BUB/BnJ m 30.0 3.97   17 0.962 0.132 19.0, 36.1 -0.65
C3H/HeJ m 34.3 2.26   20 0.504 0.0657 30.9, 38.3 -0.03
C57BL/6J m 32.6 3.37   52 0.467 0.103 27.0, 39.9 -0.27
C57BLKS/J m 28.9 2.53   20 0.566 0.0877 24.0, 34.3 -0.81
C57BR/cdJ m 40.7 5.29   16 1.32 0.13 33.1, 51.6 0.9
C57L/J m 41.8 6.08   18 1.43 0.145 29.3, 53.3 1.06
C58/J m 41.3 6.23   16 1.56 0.151 30.8, 50.6 0.99
CBA/J m 28.9 3.79   20 0.847 0.131 23.6, 36.0 -0.81
CE/J m 35.3 2.04   18 0.482 0.058 32.2, 40.7 0.12
CZECHII/EiJ m 41.5 3.64   18 0.858 0.0877 36.4, 47.9 1.02
DBA/2J m 35.7 9.71   18 2.29 0.272 0.18
DDY/JclSidSeyFrkJ m 32.0 3.37   16 0.842 0.105 24.0, 37.3 -0.36
FVB/NJ m 28.9 3.6   20 0.806 0.125 19.9, 37.7 -0.81
I/LnJ m 38.4 3.68   15 0.95 0.0958 29.0, 43.2 0.57
KK/HlJ m 28.2 2.44   15 0.63 0.0865 25.1, 32.4 -0.91
LG/J m 27.4 12.9   19 2.95 0.47 -1.03
LP/J m 28.1 8.13   20 1.82 0.289 -0.92
MA/MyJ m 35.6 3.51   16 0.877 0.0987 28.0, 41.1 0.16
MOLF/EiJ m 31.6 4.07   16 1.02 0.129 26.2, 38.6 -0.42
MRL/MpJ m 30.8 4.08   19 0.937 0.133 23.9, 38.9 -0.53
MSM/MsJ m 46.2 5.32   18 1.25 0.115 35.1, 54.7 1.7
NOD/ShiLtJ m 41.5 4.23   19 0.971 0.102 32.0, 47.1 1.02
NON/ShiLtJ m 32.2 2.84   20 0.634 0.088 27.5, 38.5 -0.33
NOR/LtJ m 39.9 4.89   20 1.09 0.123 32.2, 55.1 0.78
NZB/BlNJ m 33.6 3.69   18 0.87 0.11 27.1, 40.2 -0.13
NZO/HlLtJ m 29.3 3.04   16 0.759 0.104 24.8, 35.5 -0.75
NZW/LacJ m 26.0 2.63   19 0.603 0.101 21.0, 30.2 -1.23
PERA/EiJ m 37.1 4.3   15 1.11 0.116 30.2, 45.1 0.38
P/J m 32.8 2.41   12 0.695 0.0735 28.2, 36.7 -0.24
PL/J m 37.0 4.86   19 1.12 0.131 27.8, 44.0 0.36
PWD/PhJ m 50.2 8.75   15 2.26 0.174 37.2, 63.2 2.28
RIIIS/J m 33.6 3.82   15 0.985 0.113 29.3, 40.8 -0.13
SEA/GnJ m 37.7 3.81   15 0.983 0.101 32.2, 44.1 0.47
SJL/J m 32.7 4.75   24 0.97 0.145 24.1, 42.0 -0.26
SKIVE/EiJ m 49.6 7.13   18 1.68 0.144 37.9, 60.6 2.19
SM/J m 36.3 3.12   19 0.717 0.086 31.0, 42.4 0.26
SWR/J m 34.3 4.29   17 1.04 0.125 27.3, 41.0 -0.03
TALLYHO/JngJ m 31.3 4.07   16 1.02 0.13 27.0, 40.3 -0.46
WSB/EiJ m 34.9 4.5   17 1.09 0.129 25.7, 41.5 0.06
ZALENDE/EiJ m 49.6 5.26   17 1.28 0.106 38.0, 60.1 2.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 16.84 1.2658 19.3246 14.3554
A/J m 21.8826 1.1803 24.1995 19.5657
AKR/J m 31.415 1.2658 33.8996 28.9304
BALB/cByJ m 36.9778 1.3342 39.5968 34.3587
BTBR T+ Itpr3tf/J m 26.6632 1.2986 29.2123 24.114
BUB/BnJ m 29.9706 1.3729 32.6656 27.2756
C3H/HeJ m 34.31 1.2658 36.7946 31.8254
C57BL/6J m 32.6423 0.785 34.1832 31.1014
C57BLKS/J m 28.87 1.2658 31.3546 26.3854
C57BR/cdJ m 40.6937 1.4152 43.4717 37.9158
C57L/J m 41.7611 1.3342 44.3802 39.1421
C58/J m 41.2625 1.4152 44.0404 38.4846
CBA/J m 28.92 1.2658 31.4046 26.4354
CE/J m 35.2611 1.3342 37.8802 32.6421
CZECHII/EiJ m 41.4778 1.3342 44.0968 38.8587
DBA/2J m 35.7389 1.3342 38.3579 33.1198
DDY/JclSidSeyFrkJ m 31.9875 1.4152 34.7654 29.2096
FVB/NJ m 28.87 1.2658 31.3546 26.3854
I/LnJ m 38.4067 1.4616 41.2757 35.5376
KK/HlJ m 28.1867 1.4616 31.0557 25.3176
LG/J m 27.4105 1.2986 29.9597 24.8613
LP/J m 28.125 1.2658 30.6096 25.6404
MA/MyJ m 35.5563 1.4152 38.3342 32.7783
MOLF/EiJ m 31.6438 1.4152 34.4217 28.8658
MRL/MpJ m 30.8 1.2986 33.3492 28.2508
MSM/MsJ m 46.1833 1.3342 48.8024 43.5643
NOD/ShiLtJ m 41.4789 1.2986 44.0281 38.9298
NON/ShiLtJ m 32.235 1.2658 34.7196 29.7504
NOR/LtJ m 39.875 1.2658 42.3596 37.3904
NZB/BlNJ m 33.6222 1.3342 36.2413 31.0032
NZO/HlLtJ m 29.3375 1.4152 32.1154 26.5596
NZW/LacJ m 26.0105 1.2986 28.5597 23.4613
PERA/EiJ m 37.06 1.4616 39.929 34.191
P/J m 32.775 1.6341 35.9827 29.5673
PL/J m 37.0263 1.2986 39.5755 34.4771
PWD/PhJ m 50.1733 1.4616 53.0424 47.3043
RIIIS/J m 33.6333 1.4616 36.5024 30.7643
SEA/GnJ m 37.7267 1.4616 40.5957 34.8576
SJL/J m 32.7083 1.1555 34.9765 30.4402
SKIVE/EiJ m 49.6056 1.3342 52.2246 46.9865
SM/J m 36.3368 1.2986 38.886 33.7877
SWR/J m 34.3294 1.3729 37.0244 31.6344
TALLYHO/JngJ m 31.3375 1.4152 34.1154 28.5596
WSB/EiJ m 34.9176 1.3729 37.6126 32.2227
ZALENDE/EiJ m 49.5882 1.3729 52.2832 46.8933




  GWAS USING LINEAR MIXED MODELS