Project measure / variable:   Tarantino1   vel_ctrl

ID, description, units MPD:45926   vel_ctrl   average velocity, 30 min test   [cm/s]  baseline (day 2)  
cocaine study
Data set, strains Tarantino1   inbred   45 strains     sex: m     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino1 - average velocity, 30 min test baseline (day 2)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested45 strains
Mean of the strain means31.4   cm/s
Median of the strain means31.1   cm/s
SD of the strain means± 5.49
Coefficient of variation (CV)0.175
Min–max range of strain means15.3   –   51.2   cm/s
Mean sample size per strain18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 44 24093.3171 547.5754 31.4409 < 0.0001
Residuals 795 13845.756 17.416


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 15.3 10.6   20 2.36 0.688 -2.93
A/J m 24.2 9.21   23 1.92 0.38 -1.31
AKR/J m 28.5 2.12   20 0.475 0.0745 24.6, 33.3 -0.52
BALB/cByJ m 33.7 2.27   18 0.535 0.0674 28.5, 36.1 0.42
BTBR T+ Itpr3tf/J m 26.3 2.8   19 0.642 0.106 19.9, 29.5 -0.92
BUB/BnJ m 33.2 2.78   17 0.673 0.0837 29.4, 39.4 0.33
C3H/HeJ m 29.9 2.67   20 0.598 0.0896 25.3, 33.5 -0.27
C57BL/6J m 30.3 2.58   52 0.357 0.0852 25.2, 35.7 -0.2
C57BLKS/J m 25.3 2.93   20 0.654 0.115 21.3, 31.6 -1.11
C57BR/cdJ m 34.1 2.5   16 0.625 0.0734 29.9, 39.3 0.5
C57L/J m 36.5 3.52   18 0.83 0.0964 31.6, 45.3 0.93
C58/J m 36.5 2.81   16 0.702 0.0768 30.2, 42.0 0.93
CBA/J m 26.6 3.1   20 0.694 0.116 20.3, 32.7 -0.87
CE/J m 31.8 2.95   18 0.696 0.0929 27.2, 37.7 0.08
CZECHII/EiJ m 37.7 4.41   18 1.04 0.117 32.2, 47.1 1.15
DBA/2J m 31.9 4.05   18 0.954 0.127 20.0, 39.5 0.1
DDY/JclSidSeyFrkJ m 27.3 2.77   16 0.693 0.102 22.5, 30.9 -0.74
FVB/NJ m 32.7 4.48   20 1.0 0.137 24.8, 40.5 0.24
I/LnJ m 31.1 2.55   15 0.66 0.0822 27.9, 36.0 -0.05
KK/HlJ m 24.7 1.66   15 0.428 0.067 21.0, 28.2 -1.22
LG/J m 31.7 9.06   19 2.08 0.286 0.06
LP/J m 26.6 8.63   20 1.93 0.324 -0.87
MA/MyJ m 31.9 2.39   16 0.597 0.0749 25.4, 35.2 0.1
MOLF/EiJ m 28.3 1.78   16 0.445 0.0628 25.7, 32.2 -0.56
MRL/MpJ m 28.4 3.78   19 0.868 0.133 23.3, 39.3 -0.54
MSM/MsJ m 37.4 2.96   18 0.698 0.0792 31.6, 42.8 1.1
NOD/ShiLtJ m 37.4 1.99   19 0.456 0.0532 33.6, 41.3 1.1
NON/ShiLtJ m 30.4 1.82   20 0.408 0.06 25.7, 32.9 -0.18
NOR/LtJ m 33.4 3.12   20 0.697 0.0933 28.2, 41.5 0.37
NZB/BlNJ m 27.4 1.65   18 0.39 0.0604 25.0, 31.2 -0.72
NZO/HlLtJ m 25.8 2.33   16 0.582 0.0903 22.7, 31.7 -1.01
NZW/LacJ m 25.7 2.72   19 0.624 0.106 20.6, 32.7 -1.03
PERA/EiJ m 35.8 5.19   15 1.34 0.145 26.9, 45.7 0.81
P/J m 30.1 4.05   12 1.17 0.135 25.2, 40.7 -0.23
PL/J m 30.9 2.31   19 0.531 0.0748 27.4, 34.5 -0.09
PWD/PhJ m 37.4 6.69   15 1.73 0.179 27.5, 51.5 1.1
RIIIS/J m 31.7 1.57   15 0.406 0.0496 29.6, 34.8 0.06
SEA/GnJ m 34.2 3.14   16 0.785 0.0918 29.6, 40.2 0.51
SJL/J m 30.1 3.2   24 0.653 0.106 24.9, 37.4 -0.23
SKIVE/EiJ m 38.6 3.18   19 0.73 0.0825 33.9, 45.9 1.32
SM/J m 36.1 2.08   19 0.478 0.0577 33.7, 39.8 0.86
SWR/J m 34.3 2.73   17 0.662 0.0795 29.4, 41.1 0.53
TALLYHO/JngJ m 29.1 2.5   16 0.626 0.0859 25.8, 33.5 -0.41
WSB/EiJ m 30.3 2.4   17 0.583 0.0793 26.3, 35.1 -0.2
ZALENDE/EiJ m 51.2 5.71   17 1.38 0.111 42.5, 64.1 3.61


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 15.345 0.9332 17.1768 13.5132
A/J m 24.2391 0.8702 25.9473 22.531
AKR/J m 28.49 0.9332 30.3218 26.6582
BALB/cByJ m 33.7056 0.9836 35.6364 31.7747
BTBR T+ Itpr3tf/J m 26.3 0.9574 28.1794 24.4206
BUB/BnJ m 33.1647 1.0122 35.1515 31.1779
C3H/HeJ m 29.855 0.9332 31.6868 28.0232
C57BL/6J m 30.2712 0.5787 31.4072 29.1351
C57BLKS/J m 25.345 0.9332 27.1768 23.5132
C57BR/cdJ m 34.0563 1.0433 36.1042 32.0083
C57L/J m 36.5278 0.9836 38.4586 34.5969
C58/J m 36.5313 1.0433 38.5792 34.4833
CBA/J m 26.65 0.9332 28.4818 24.8182
CE/J m 31.8 0.9836 33.7308 29.8692
CZECHII/EiJ m 37.7056 0.9836 39.6364 35.7747
DBA/2J m 31.9389 0.9836 33.8697 30.008
DDY/JclSidSeyFrkJ m 27.275 1.0433 29.323 25.227
FVB/NJ m 32.715 0.9332 34.5468 30.8832
I/LnJ m 31.0733 1.0775 33.1885 28.9582
KK/HlJ m 24.7133 1.0775 26.8285 22.5982
LG/J m 31.7105 0.9574 33.5899 29.8312
LP/J m 26.62 0.9332 28.4518 24.7882
MA/MyJ m 31.9 1.0433 33.948 29.852
MOLF/EiJ m 28.3313 1.0433 30.3792 26.2833
MRL/MpJ m 28.4421 0.9574 30.3215 26.5628
MSM/MsJ m 37.4 0.9836 39.3308 35.4692
NOD/ShiLtJ m 37.4105 0.9574 39.2899 35.5312
NON/ShiLtJ m 30.41 0.9332 32.2418 28.5782
NOR/LtJ m 33.4 0.9332 35.2318 31.5682
NZB/BlNJ m 27.3556 0.9836 29.2864 25.4247
NZO/HlLtJ m 25.7813 1.0433 27.8292 23.7333
NZW/LacJ m 25.6895 0.9574 27.5688 23.8101
PERA/EiJ m 35.7667 1.0775 37.8818 33.6515
P/J m 30.125 1.2047 32.4898 27.7602
PL/J m 30.9368 0.9574 32.8162 29.0575
PWD/PhJ m 37.4133 1.0775 39.5285 35.2982
RIIIS/J m 31.7067 1.0775 33.8218 29.5915
SEA/GnJ m 34.2063 1.0433 36.2542 32.1583
SJL/J m 30.075 0.8519 31.7472 28.4028
SKIVE/EiJ m 38.5842 0.9574 40.4636 36.7049
SM/J m 36.0789 0.9574 37.9583 34.1996
SWR/J m 34.3 1.0122 36.2868 32.3132
TALLYHO/JngJ m 29.1313 1.0433 31.1792 27.0833
WSB/EiJ m 30.3059 1.0122 32.2927 28.3191
ZALENDE/EiJ m 51.2235 1.0122 53.2104 49.2367




  GWAS USING LINEAR MIXED MODELS