Phenotype measure:   Tarantino1   amb_epi_ctrl


  STRAIN COMPARISON PLOT
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Tarantino1 - ambulatory episodes, 30 min test baseline (day 2)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested45 strains
Mean of the strain means152   n
Median of the strain means151   n
SD of the strain means± 71.5
Coefficient of variation (CV)0.469
Min–max range of strain means23.2   –   319   n
Mean sample size per strain18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 44 4070941.015 92521.3867 36.6319 < 0.0001
Residuals 794 2005407.4832 2525.7021


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 23.2 30.1   20 6.74 1.3 -1.81
A/J m 31.7 33.6   23 7.0 1.06 -1.69
AKR/J m 206.0 47.1   20 10.5 0.229 120.0, 326.0 0.75
BALB/cByJ m 174.0 60.8   18 14.3 0.349 56.0, 272.0 0.3
BTBR T+ Itpr3tf/J m 95.5 42.5   19 9.74 0.445 31.0, 174.0 -0.8
BUB/BnJ m 228.0 64.7   17 15.7 0.284 141.0, 398.0 1.06
C3H/HeJ m 83.1 22.1   20 4.93 0.266 41.0, 125.0 -0.97
C57BL/6J m 151.0 53.8   52 7.46 0.358 7.0, 298.0 -0.02
C57BLKS/J m 63.0 23.5   20 5.26 0.373 25.0, 113.0 -1.25
C57BR/cdJ m 319.0 72.2   16 18.0 0.226 216.0, 450.0 2.33
C57L/J m 241.0 69.9   18 16.5 0.29 129.0, 417.0 1.24
C58/J m 274.0 69.0   16 17.2 0.251 145.0, 395.0 1.7
CBA/J m 68.2 36.4   20 8.15 0.534 20.0, 174.0 -1.18
CE/J m 232.0 54.3   18 12.8 0.234 136.0, 344.0 1.12
CZECHII/EiJ m 103.0 40.0   18 9.44 0.388 47.0, 164.0 -0.69
DBA/2J m 154.0 47.0   18 11.1 0.306 1.0, 219.0 0.02
DDY/JclSidSeyFrkJ m 118.0 39.4   16 9.85 0.333 62.0, 186.0 -0.48
FVB/NJ m 154.0 64.2   20 14.4 0.418 30.0, 263.0 0.02
I/LnJ m 223.0 61.3   15 15.8 0.275 136.0, 331.0 0.99
KK/HlJ m 143.0 61.3   15 15.8 0.427 41.0, 269.0 -0.13
LG/J m 92.8 48.7   19 11.2 0.525 -0.83
LP/J m 44.7 36.6   20 8.17 0.818 -1.51
MA/MyJ m 204.0 75.3   16 18.8 0.37 64.0, 366.0 0.72
MOLF/EiJ m 142.0 43.7   16 10.9 0.309 74.0, 216.0 -0.14
MRL/MpJ m 183.0 60.1   19 13.8 0.329 109.0, 375.0 0.43
MSM/MsJ m 146.0 52.4   18 12.4 0.359 63.0, 238.0 -0.09
NOD/ShiLtJ m 264.0 67.4   19 15.5 0.255 138.0, 407.0 1.56
NON/ShiLtJ m 153.0 39.5   20 8.84 0.258 90.0, 219.0 0.01
NOR/LtJ m 244.0 67.4   20 15.1 0.276 140.0, 404.0 1.28
NZB/BlNJ m 114.0 30.0   18 7.06 0.262 75.0, 183.0 -0.54
NZO/HlLtJ m 50.4 28.8   16 7.2 0.571 22.0, 124.0 -1.43
NZW/LacJ m 99.6 52.6   19 12.1 0.528 16.0, 253.0 -0.74
PERA/EiJ m 62.2 16.8   15 4.33 0.269 30.0, 93.0 -1.26
P/J m 185.0 77.6   12 22.4 0.419 50.0, 301.0 0.46
PL/J m 187.0 43.1   19 9.88 0.23 128.0, 277.0 0.49
PWD/PhJ m 80.9 32.2   15 8.32 0.398 35.0, 130.0 -1.0
RIIIS/J m 238.0 38.5   15 9.95 0.162 172.0, 307.0 1.2
SEA/GnJ m 189.0 41.2   16 10.3 0.218 80.0, 230.0 0.51
SJL/J m 98.2 50.6   24 10.3 0.515 45.0, 249.0 -0.76
SKIVE/EiJ m 208.0 57.9   18 13.6 0.278 110.0, 292.0 0.78
SM/J m 234.0 36.1   19 8.29 0.154 173.0, 319.0 1.14
SWR/J m 142.0 26.7   17 6.48 0.188 95.0, 190.0 -0.14
TALLYHO/JngJ m 98.2 36.5   16 9.13 0.372 48.0, 178.0 -0.76
WSB/EiJ m 128.0 69.5   17 16.9 0.544 24.0, 248.0 -0.34
ZALENDE/EiJ m 182.0 43.9   17 10.7 0.241 116.0, 280.0 0.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 23.25 11.2377 45.309 1.191
A/J m 31.6522 10.4792 52.2223 11.082
AKR/J m 206.0 11.2377 228.059 183.941
BALB/cByJ m 173.9444 11.8455 197.1967 150.6922
BTBR T+ Itpr3tf/J m 95.5263 11.5296 118.1584 72.8942
BUB/BnJ m 228.1176 12.189 252.044 204.1913
C3H/HeJ m 83.1 11.2377 105.159 61.041
C57BL/6J m 150.5385 6.9693 164.2189 136.858
C57BLKS/J m 62.95 11.2377 85.009 40.891
C57BR/cdJ m 319.3125 12.5641 343.9753 294.6497
C57L/J m 241.1667 11.8455 264.4189 217.9144
C58/J m 274.5 12.5641 299.1628 249.8372
CBA/J m 68.2 11.2377 90.259 46.141
CE/J m 231.6667 11.8455 254.9189 208.4144
CZECHII/EiJ m 103.0556 11.8455 126.3078 79.8033
DBA/2J m 153.5 11.8455 176.7523 130.2477
DDY/JclSidSeyFrkJ m 118.125 12.5641 142.7878 93.4622
FVB/NJ m 153.7 11.2377 175.759 131.641
I/LnJ m 223.2667 12.9761 248.7383 197.7951
KK/HlJ m 143.4667 12.9761 168.9383 117.9951
LG/J m 92.8421 11.5296 115.4742 70.21
LP/J m 44.7 11.2377 66.759 22.641
MA/MyJ m 203.5625 12.5641 228.2253 178.8997
MOLF/EiJ m 141.5 12.5641 166.1628 116.8372
MRL/MpJ m 182.6316 11.5296 205.2637 159.9995
MSM/MsJ m 146.1111 11.8455 169.3634 122.8588
NOD/ShiLtJ m 264.3684 11.5296 287.0005 241.7363
NON/ShiLtJ m 153.3 11.2377 175.359 131.241
NOR/LtJ m 244.05 11.2377 266.109 221.991
NZB/BlNJ m 114.3889 11.8455 137.6412 91.1366
NZO/HlLtJ m 50.375 12.5641 75.0378 25.7122
NZW/LacJ m 99.5789 11.5296 122.211 76.9468
PERA/EiJ m 62.2 12.9761 87.6716 36.7284
P/J m 185.0833 14.5078 213.5614 156.6052
PL/J m 187.1053 11.5296 209.7374 164.4732
PWD/PhJ m 80.9333 12.9761 106.4049 55.4617
RIIIS/J m 238.0 12.9761 263.4716 212.5284
SEA/GnJ m 188.8125 12.5641 213.4753 164.1497
SJL/J m 98.25 10.2585 118.3871 78.1129
SKIVE/EiJ m 208.2778 11.8455 231.5301 185.0255
SM/J m 234.3158 11.5296 256.9479 211.6837
SWR/J m 142.0588 12.189 165.9852 118.1324
TALLYHO/JngJ m 98.25 12.5641 122.9128 73.5872
WSB/EiJ m 127.7059 12.189 151.6323 103.7795
ZALENDE/EiJ m 181.9412 12.189 205.8676 158.0148




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.