Project measure / variable:   Tarantino1   dist_ctrl

ID, description, units MPD:45911   dist_ctrl   distance traveled, 30 min test   [cm]  baseline (day 2)  
cocaine study
Data set, strains Tarantino1   inbred   45 strains     sex: m     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino1 - distance traveled, 30 min test baseline (day 2)

C57BR/cdJC58/JNOD/ShiLtJC57L/JRIIIS/JNOR/LtJSM/JI/LnJCE/JBUB/BnJMA/MyJSKIVE/EiJAKR/JSEA/GnJP/JMRL/MpJZALENDE/EiJPL/JBALB/cByJDBA/2JMSM/MsJKK/HlJC57BL/6JFVB/NJNON/ShiLtJSWR/JMOLF/EiJWSB/EiJDDY/JclSidSeyFrkJNZB/BlNJCZECHII/EiJTALLYHO/JngJNZW/LacJSJL/JBTBR T<+> Itpr3<tf>/JLG/JCBA/JC3H/HeJPWD/PhJC57BLKS/JPERA/EiJNZO/HlLtJLP/JA/J129S1/SvImJ cm 02,0004,0006,0008,00010,00012,00014,00016,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested45 strains
Mean of the strain means4838   cm
Median of the strain means4724   cm
SD of the strain means± 2197
Coefficient of variation (CV)0.454
Min–max range of strain means820   –   10405   cm
Mean sample size per strain18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 44 3823308445.9642 86893373.7719 36.611 < 0.0001
Residuals 795 1886869661.687 2373420.9581


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 45 (45)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129S1/SvImJ m 820.0 1030.0   20 230.0 1.26 -1.83
A/J m 1201.0 961.0   23 200.0 0.8 58.1, 3094.0 -1.65
AKR/J m 6186.0 1411.0   20 316.0 0.228 3662.0, 9826.0 0.61
BALB/cByJ m 5331.0 1750.0   18 412.0 0.328 1786.0, 8463.0 0.22
BTBR T+ Itpr3tf/J m 3058.0 1324.0   19 304.0 0.433 1178.0, 5728.0 -0.81
BUB/BnJ m 6733.0 1717.0   17 416.0 0.255 4376.0, 11090.0 0.86
C3H/HeJ m 2587.0 647.0   20 145.0 0.25 1173.0, 4087.0 -1.02
C57BL/6J m 4724.0 1541.0   52 214.0 0.326 402.0, 8950.0 -0.05
C57BLKS/J m 2181.0 686.0   20 153.0 0.314 961.0, 3515.0 -1.21
C57BR/cdJ m 10405.0 2871.0   16 718.0 0.276 6610.0, 16098.0 2.53
C57L/J m 7829.0 2288.0   18 539.0 0.292 4173.0, 13785.0 1.36
C58/J m 8457.0 2209.0   16 552.0 0.261 4765.0, 13322.0 1.65
CBA/J m 2888.0 856.0   20 191.0 0.296 1574.0, 5520.0 -0.89
CE/J m 7242.0 1654.0   18 390.0 0.228 4259.0, 11023.0 1.09
CZECHII/EiJ m 3533.0 1351.0   18 319.0 0.383 1556.0, 6184.0 -0.59
DBA/2J m 5023.0 1577.0   18 372.0 0.314 66.3, 6993.0 0.08
DDY/JclSidSeyFrkJ m 3704.0 996.0   16 249.0 0.269 1890.0, 5321.0 -0.52
FVB/NJ m 4647.0 1744.0   20 390.0 0.375 914.0, 7561.0 -0.09
I/LnJ m 7295.0 1952.0   15 504.0 0.268 4564.0, 10762.0 1.12
KK/HlJ m 4786.0 1720.0   15 444.0 0.359 2123.0, 7933.0 -0.02
LG/J m 2897.0 1362.0   19 312.0 0.47 250.0, 5376.0 -0.88
LP/J m 1469.0 1111.0   20 248.0 0.756 -1.53
MA/MyJ m 6629.0 2324.0   16 581.0 0.351 2087.0, 11443.0 0.82
MOLF/EiJ m 4496.0 1349.0   16 337.0 0.3 2436.0, 6879.0 -0.16
MRL/MpJ m 5607.0 1979.0   19 454.0 0.353 3650.0, 12779.0 0.35
MSM/MsJ m 4845.0 1693.0   18 399.0 0.349 1856.0, 7534.0 0.0
NOD/ShiLtJ m 8397.0 2177.0   19 499.0 0.259 4738.0, 13029.0 1.62
NON/ShiLtJ m 4641.0 1169.0   20 261.0 0.252 2736.0, 6608.0 -0.09
NOR/LtJ m 7429.0 2129.0   20 476.0 0.287 4338.0, 12627.0 1.18
NZB/BlNJ m 3659.0 951.0   18 224.0 0.26 2276.0, 5686.0 -0.54
NZO/HlLtJ m 1787.0 1043.0   16 261.0 0.584 785.0, 4325.0 -1.39
NZW/LacJ m 3251.0 1464.0   19 336.0 0.45 763.0, 7040.0 -0.72
PERA/EiJ m 2018.0 554.0   15 143.0 0.275 975.0, 3145.0 -1.28
P/J m 5645.0 2152.0   12 621.0 0.381 2014.0, 9283.0 0.37
PL/J m 5535.0 1177.0   19 270.0 0.213 3904.0, 8030.0 0.32
PWD/PhJ m 2539.0 959.0   15 248.0 0.378 1223.0, 4507.0 -1.05
RIIIS/J m 7731.0 1460.0   15 377.0 0.189 5522.0, 10805.0 1.32
SEA/GnJ m 5865.0 1198.0   16 300.0 0.204 2721.0, 7277.0 0.47
SJL/J m 3161.0 1499.0   24 306.0 0.474 1318.0, 7105.0 -0.76
SKIVE/EiJ m 6454.0 1695.0   19 389.0 0.263 3496.0, 8963.0 0.74
SM/J m 7324.0 1105.0   19 253.0 0.151 5837.0, 9490.0 1.13
SWR/J m 4521.0 700.0   17 170.0 0.155 3378.0, 6088.0 -0.14
TALLYHO/JngJ m 3262.0 1001.0   16 250.0 0.307 1645.0, 5429.0 -0.72
WSB/EiJ m 4349.0 2313.0   17 561.0 0.532 924.0, 8890.0 -0.22
ZALENDE/EiJ m 5550.0 1189.0   17 288.0 0.214 3821.0, 8747.0 0.32


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 820.23 344.4866 1496.4409 144.0191
A/J m 1201.2478 321.2355 1831.8177 570.6779
AKR/J m 6186.15 344.4866 6862.3609 5509.9391
BALB/cByJ m 5330.9444 363.1208 6043.7333 4618.1556
BTBR T+ Itpr3tf/J m 3058.0526 353.4358 3751.8304 2364.2749
BUB/BnJ m 6733.4118 373.6482 7466.8655 5999.9581
C3H/HeJ m 2587.25 344.4866 3263.4609 1911.0391
C57BL/6J m 4723.6538 213.6415 5143.022 4304.2856
C57BLKS/J m 2181.1 344.4866 2857.3109 1504.8891
C57BR/cdJ m 10404.8125 385.1478 11160.8393 9648.7857
C57L/J m 7828.8333 363.1208 8541.6222 7116.0445
C58/J m 8456.875 385.1478 9212.9018 7700.8482
CBA/J m 2888.05 344.4866 3564.2609 2211.8391
CE/J m 7242.4444 363.1208 7955.2333 6529.6556
CZECHII/EiJ m 3533.0556 363.1208 4245.8444 2820.2667
DBA/2J m 5022.6278 363.1208 5735.4167 4309.8389
DDY/JclSidSeyFrkJ m 3704.375 385.1478 4460.4018 2948.3482
FVB/NJ m 4647.45 344.4866 5323.6609 3971.2391
I/LnJ m 7294.5333 397.7789 8075.3544 6513.7122
KK/HlJ m 4786.4667 397.7789 5567.2878 4005.6456
LG/J m 2896.5263 353.4358 3590.3041 2202.7486
LP/J m 1469.45 344.4866 2145.6609 793.2391
MA/MyJ m 6628.6875 385.1478 7384.7143 5872.6607
MOLF/EiJ m 4495.5 385.1478 5251.5268 3739.4732
MRL/MpJ m 5606.6316 353.4358 6300.4093 4912.8538
MSM/MsJ m 4845.1667 363.1208 5557.9555 4132.3778
NOD/ShiLtJ m 8396.6316 353.4358 9090.4093 7702.8538
NON/ShiLtJ m 4640.75 344.4866 5316.9609 3964.5391
NOR/LtJ m 7428.65 344.4866 8104.8609 6752.4391
NZB/BlNJ m 3658.8333 363.1208 4371.6222 2946.0445
NZO/HlLtJ m 1786.8125 385.1478 2542.8393 1030.7857
NZW/LacJ m 3250.8947 353.4358 3944.6725 2557.117
PERA/EiJ m 2018.3333 397.7789 2799.1544 1237.5122
P/J m 5644.8333 444.7303 6517.8179 4771.8488
PL/J m 5535.0526 353.4358 6228.8304 4841.2749
PWD/PhJ m 2538.5333 397.7789 3319.3544 1757.7122
RIIIS/J m 7731.0667 397.7789 8511.8878 6950.2456
SEA/GnJ m 5865.375 385.1478 6621.4018 5109.3482
SJL/J m 3161.2083 314.4718 3778.5016 2543.9151
SKIVE/EiJ m 6454.2105 353.4358 7147.9883 5760.4328
SM/J m 7324.4737 353.4358 8018.2514 6630.6959
SWR/J m 4521.4706 373.6482 5254.9243 3788.0169
TALLYHO/JngJ m 3262.4375 385.1478 4018.4643 2506.4107
WSB/EiJ m 4348.9412 373.6482 5082.3949 3615.4875
ZALENDE/EiJ m 5549.5294 373.6482 6282.9831 4816.0757




  GWAS USING LINEAR MIXED MODELS

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